Training materials
Contributors: Alvaro Gonzalez or Erik Garrison or Eija Korpelainen or Branka Franicevic
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ekorpela/cloud-vm-workshop
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Video
RDMbites | Sequencing Data QC: causes and consequences
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Video
RDMbites | Sequencing data QC: trimming
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Video
RDMbites | FASTQ format
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Video
RDMbites | Sequencing Data QC: FastQC metrics
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Video
RDMbites | RNAseq expression data
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Video
A common framework for designing portable federated pipelines
•• intermediateData architecture, analysis and design data access federated data analysis -
Documentation, Exercise, Handout, Scripts
CPANG19 - Computational PANGenomics (2019)
•• intermediateGenomics -
Documentation, Exercise, Handout, Scripts
CPANG18 - Computational PANGenomics (2018)
•• intermediateGenomics -
Slides, course materials
Introduction to using cloud and containers for training - OpenStack and Docker oriented view
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