A common framework for designing portable federated pipelines

This video describes a common framework for designing portable federated pipelines. The joint cohort genotyping pipeline is provided as a specific implementation example. The ability of the pipeline to run in different environments, accessing the data via different protocols, and applying the appropriate normalisations is demonstrated.

Extensive documentation can be found in this github repository: https://github.com/CINECA-project/wp4-federated-joint-cohort-analysis/tree/master/4.3-pipelines/demonstrators/4.3.1-genotyping

Licence: Creative Commons Attribution Non Commercial Share Alike 4.0 International

Keywords: data access, federated data analysis


Additional information

Resource type: Video

Authors: Kirill Tsukanov

Contributors: Alvaro Gonzalez

Scientific topics: Data architecture, analysis and design