Containers & Workflow pipelines workshop
The first day (20 May 2021) is dedicated to Containers (Docker & Singularity) which are great tools for code portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify...
Keywords: Containers, Nextflow
Resource type: Training materials
Containers & Workflow pipelines workshop
https://nextflow-workshop.readthedocs.io/en/latest/
http://tess.elixir-uk.org/materials/containers-workflow-pipelines-workshop
The first day (20 May 2021) is dedicated to Containers (Docker & Singularity) which are great tools for code portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, at the end of the first day, Singularity will be highlighted as well.
On the second day (27 May 2021), you will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language.
Alexander Botzki
Tuur Muyldermans
Containers, Nextflow
bioinformaticians
Preserve, publish and share your data
- why preserve data
- what data should be preserved
- how share data
- where to deposit your data
- Fairsharing, re3data
- ELIXIR Core Resources
- Data Formats
- Generic archives
Scientific topics: Data management, Data submission, annotation, and curation
Keywords: data formats, ELIXIR Core resources, FAIR data submission
Resource type: Presentation
Preserve, publish and share your data
https://osf.io/whj7t/
http://tess.elixir-uk.org/materials/preserve-publish-and-share-your-data
- why preserve data
- what data should be preserved
- how share data
- where to deposit your data
- Fairsharing, re3data
- ELIXIR Core Resources
- Data Formats
- Generic archives
Alexander Botzki
Data management
Data submission, annotation, and curation
data formats, ELIXIR Core resources, FAIR data submission
life scientists
Data Management and Writing a Data Management Plan
Writing a Data Management Plan
A good data management plan is crucial for any scientist and researcher. In this course, you will learn how to write one. You will find out how you can prepare, handle and share your research data.
Scientific topics: Data management
Resource type: e-learning
Data Management and Writing a Data Management Plan
https://elearning.bits.vib.be/courses/writing-a-data-management-plan/
http://tess.elixir-uk.org/materials/data-management-and-writing-a-data-management-plan
Writing a Data Management Plan
A good data management plan is crucial for any scientist and researcher. In this course, you will learn how to write one. You will find out how you can prepare, handle and share your research data.
Alexander Botzki
Geert Bonamie
Data management
