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Introduction to Workflows with Common Workflow Language

Introduction to workflow thinking for novices, using the Common Workflow Language

Scientific topics: Workflows

Operations: RNA-Seq analysis

Keywords: cwl, commonwl, sciworkflows, workflows

Resource type: Carpentries style curriculum

Introduction to Workflows with Common Workflow Language http://tess.elixir-uk.org/materials/introduction-to-workflows-with-common-workflow-language Introduction to workflow thinking for novices, using the Common Workflow Language Stian Soiland-Reyes Toby Hodges Sehrish Kanwal Pedro L Fernandes Workflows cwl, commonwl, sciworkflows, workflows esearchers and research software engineers who would like to begin automating their analyses in workflows.
Tutorial on working with computing clusters

This tutorial provides an introduction to how to access a computing cluster, manage your data and submit jobs using a batch job system.

Keywords: HPC

Resource type: Tutorial

Tutorial on working with computing clusters http://tess.elixir-uk.org/materials/tutorial-on-working-with-computing-clusters This tutorial provides an introduction to how to access a computing cluster, manage your data and submit jobs using a batch job system. HPC Novice users of HPC and anyone who expects to need to use HPC systems at some stage in their research
Helis Academy course FAIR data stewardship 2021, Day 5, Data rights

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: FAIR, data management, Data rights

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 5, Data rights http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-5-data-rights This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021 Data management FAIR data FAIR, data management, Data rights PhD candidates
Helis Academy course FAIR data stewardship 2021, Day 6, Metadata FAIR Data Point

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 6, March 31, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: FAIR data, Metadata

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 6, Metadata FAIR Data Point http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-6-metadata-fair-data-point This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 6, March 31, 2021 Data management FAIR data FAIR data, Metadata PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 3, Electronic Lab Notebooks (ELN)

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 3, March 22, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Electronic Lab Notebooks (ELN), Data processing, Data analysis

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 3, Electronic Lab Notebooks (ELN) http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-3-electronic-lab-notebooks-eln This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 3, March 22, 2021 Data management FAIR data Electronic Lab Notebooks (ELN), Data processing, Data analysis PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 2, Informed consent procedures

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Informed consent procedures, Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 2, Informed consent procedures http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-informed-consent-procedures This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 Data management FAIR data Informed consent procedures, Data management planning, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 2, Introduction Wrap up

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: FAIR, Data management planning

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 2, Introduction Wrap up http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-introduction-wrap-up This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 Data management FAIR data FAIR, Data management planning PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 2, Data security and privacy

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data security, Data privacy, Data management planning

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 2, Data security and privacy http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-data-security-and-privacy This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 Data management FAIR data Data security, Data privacy, Data management planning PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 4, Data carpentry

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data carpentry, Data analysis

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 4, Data carpentry http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-4-data-carpentry This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021 Data management FAIR data Data carpentry, Data analysis PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 5, Introduction Wrap up

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: FAIR data, Data management planning

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 5, Introduction Wrap up http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-5-introduction-wrap-up This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021 Data management FAIR data FAIR data, Data management planning PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 4, Introduction Wrap up

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: FAIR data, Data management planning

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 4, Introduction Wrap up http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-4-introduction-wrap-up This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021 Data management FAIR data FAIR data, Data management planning PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 5, Preregistration

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 5, Preregistration http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-5-preregistration This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021 Data management FAIR data Data management planning, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 6, Introduction Wrap up

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 6, March 31, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 6, Introduction Wrap up http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-6-introduction-wrap-up This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 6, March 31, 2021 Data management FAIR data Data management planning, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 3, Introduction Wrap up

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 3, March 22, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 3, Introduction Wrap up http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-3-introduction-wrap-up This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 3, March 22, 2021 Data management FAIR data Data management planning, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 4, Software carpentry

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data analysis, Software Carpentry

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 4, Software carpentry http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-4-software-carpentry This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 4, March 24, 2021 Data management FAIR data Data analysis, Software Carpentry PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 5, Archiving data

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021

Scientific topics: Data management, FAIR data

Operations: Data handling

Keywords: Data preserving, Data sharing

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 5, Archiving data http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-5-archiving-data This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 5, March 29, 2021 Data management FAIR data Data preserving, Data sharing PhD candidate
Tutorial on using MPI with containers

In this material we will briefly touch upon why MPI is such a tricky component, explain the main approaches to combine MPI with containers and discuss when it is actually worthwhile to use MPI containers.

Keywords: MPI, Containers, Computer Programming, Documentation and help

Resource type: Tutorial

Tutorial on using MPI with containers http://tess.elixir-uk.org/materials/tutorial-on-using-mpi-with-containers In this material we will briefly touch upon why MPI is such a tricky component, explain the main approaches to combine MPI with containers and discuss when it is actually worthwhile to use MPI containers. MPI, Containers, Computer Programming, Documentation and help Users wanting to construct MPI containers Developers wanting to distribute their MPI dependent software HPC system maintainers wanting to enable MPI containers
Helis Academy course FAIR data stewardship 2021, Day 2, Infrastructure for storing and sharing data

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

Scientific topics: FAIR data, Data management

Operations: Data handling, Analysis

Keywords: Data analysis, Data processing, Data sharing

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 2, Infrastructure for storing and sharing data http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-infrastructure-for-storing-and-sharing-data This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 FAIR data Data management Data analysis, Data processing, Data sharing PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 2, Tools for processing and analysing data

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

Scientific topics: Data management, FAIR data

Operations: Analysis, Data handling

Keywords: Data analysis, Data processing

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 2, Tools for processing and analysing data http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-tools-for-processing-and-analysing-data This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 Data management FAIR data Data analysis, Data processing PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 1, Institute requirements

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

Scientific topics: Data management, FAIR data

Operations: Analysis, Data handling

Keywords: Data preserving, Data reuse, Data management planning, Data sharing, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 1, Institute requirements http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-institute-requirements This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 Data management FAIR data Data preserving, Data reuse, Data management planning, Data sharing, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 1, Publisher requirements

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

Scientific topics: Data management, FAIR data

Operations: Analysis, Data handling

Keywords: Data management planning, FAIR data, Data preserving, Data sharing

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 1, Publisher requirements http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-publisher-requirements This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 Data management FAIR data Data management planning, FAIR data, Data preserving, Data sharing PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 1, Funder requirements

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

Scientific topics: Data management, FAIR data

Operations: Analysis, Data handling

Keywords: Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 1, Funder requirements http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-funder-requirements This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 Data management FAIR data Data management planning, FAIR data PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 2, Finding and capturing data part 2

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

Scientific topics: FAIR data, Data management

Operations: Data handling

Keywords: Data collection

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 2, Finding and capturing data part 2 http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-finding-and-capturing-data-f94ad623-4ae5-4e48-925e-2afdc8567c6d This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 FAIR data Data management Data collection PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 2, Finding and capturing data part 1

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021

Scientific topics: FAIR data, Data quality management

Operations: Analysis

Keywords: Data collection

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 2, Finding and capturing data part 1 http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-2-finding-and-capturing-data This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 2, March 18, 2021 FAIR data Data quality management Data collection PhD candidate
Helis Academy course FAIR data stewardship 2021, Day 1, Introduction Landscape Wrap up

This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021

Scientific topics: FAIR data, Data management

Operations: Data handling, Analysis

Keywords: Data management planning, FAIR data

Resource type: Slidedeck

Helis Academy course FAIR data stewardship 2021, Day 1, Introduction Landscape Wrap up http://tess.elixir-uk.org/materials/helis-academy-course-fair-data-stewardship-2021-day-1-introduction-landscape-wrap-up-f41b3204-b9e4-486c-90cd-c2a073c0b785 This presentation is part of the 3rd edition of the Helis Academy FAIR data stewardship (for life sciences) course Day 1, March 17, 2021 FAIR data Data management Data management planning, FAIR data PhD candidate
Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle

This material is part of a FAIR data stewardship follow up workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle)

Scientific topics: FAIR data, Data management

Operations: Analysis, Data handling

Keywords: Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse

Resource type: Slidedeck

Workshop FAIR & Data stewardship for the 2021 ITN ProEVLifeCycle http://tess.elixir-uk.org/materials/workshop-fair-data-stewardship-for-the-2021-itn-proevlifecycle This material is part of a FAIR data stewardship follow up workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle) FAIR data Data management Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse PhD candidate
A Gentle Introduction to DSW for Convergers

[Data Stewardship Wizard](https://ds-wizard.org) brings together data stewards and researchers to efficiently compose data management plans (DMPs) for their research projects. Data stewards capture their knowledge and expertise in so-called knowledge models that are turned into smart...

Scientific topics: Data governance, Data management

Keywords: Data managment plan, data stewardship, data management, software tools

Resource type: Video, Slides, Webinar

A Gentle Introduction to DSW for Convergers http://tess.elixir-uk.org/materials/a-gentle-introduction-to-dsw-for-convergers [Data Stewardship Wizard](https://ds-wizard.org) brings together data stewards and researchers to efficiently compose data management plans (DMPs) for their research projects. Data stewards capture their knowledge and expertise in so-called knowledge models that are turned into smart questionnaires filled by researchers. They can then export their answers to human-readable documents following the well-known templates such as Science Europe or Horizon 2020; or machine-actionable files for further processing. Data governance Data management Data managment plan, data stewardship, data management, software tools data managers Researchers data stewards
Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle

This material is part of an introductory FAIR data stewardship workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle)

Scientific topics: FAIR data, Data management

Operations: Analysis, Data handling

Keywords: Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse

Resource type: Slidedeck

Workshop FAIR & Data stewardship for the 2020 ITN ProEVLifeCycle http://tess.elixir-uk.org/materials/workshop-fair-data-stewardship-for-the-2020-itn-proevlifecycle This material is part of an introductory FAIR data stewardship workshop for the Marie Curie ITN ProEVLifeCycle (The prostate cancer Extracellular Vesicle LifeCycle) FAIR data Data management Data analysis, Data management planning, Data processing, Data sharing, Data collection, Data preserving, Data reuse PhD candidate
Workshop FAIR & Data stewardship for the 2020 ITN COSMIC

This material is part of an introductory data stewardship workshop for the Marie Curie ITN COSMIC project (Combatting Disorders of Adaptive Immunity with Systems MedICine).

Scientific topics: Data management, FAIR data

Operations: Data handling, Analysis

Keywords: Data analysis, Data collection, Data management planning, Data preserving, Data processing, Data reuse, Data sharing

Resource type: Slidedeck

Workshop FAIR & Data stewardship for the 2020 ITN COSMIC http://tess.elixir-uk.org/materials/workshop-fair-data-stewardship-for-the-2020-itn-cosmic This material is part of an introductory data stewardship workshop for the Marie Curie ITN COSMIC project (Combatting Disorders of Adaptive Immunity with Systems MedICine). Data management FAIR data Data analysis, Data collection, Data management planning, Data preserving, Data processing, Data reuse, Data sharing PhD candidate
Containers & Workflow pipelines workshop

The first day (20 May 2021) is dedicated to Containers (Docker & Singularity) which are great tools for code portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify...

Keywords: Containers, Nextflow

Resource type: Training materials

Containers & Workflow pipelines workshop http://tess.elixir-uk.org/materials/containers-workflow-pipelines-workshop The first day (20 May 2021) is dedicated to Containers (Docker & Singularity) which are great tools for code portability and reproducibility of your analysis. You will learn how to use containers and how to build a container from scratch, share it with others and how to re-use and modify existing containers. After an extensive explanation on Docker containers, at the end of the first day, Singularity will be highlighted as well. On the second day (27 May 2021), you will learn how to use Nextflow for building scalable and reproducible bioinformatics pipelines and running them on a personal computer, cluster and cloud. Starting from the basic concepts we will build our own simple pipeline and add new features with every step, all in the new DSL2 language. Containers, Nextflow bioinformaticians