Training materials
Authors: Malachi Griffith or Jonathan Karr or Quaid Morris or Christopher Barnett
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hands-on tutorial
Hands-on for 'Galaxy 101 for everyone' tutorial
• beginnerintroduction -
hands-on tutorial
Hands-on for 'Analysis of molecular dynamics simulations' tutorial
•• intermediateComputational chemistry computational-chemistry -
hands-on tutorial
Hands-on for 'High Throughput Molecular Dynamics and Analysis' tutorial
••• advancedComputational chemistry computational-chemistry -
hands-on tutorial
Hands-on for 'Running molecular dynamics simulations using NAMD' tutorial
•• intermediateComputational chemistry computational-chemistry -
hands-on tutorial
Hands-on for 'Setting up molecular systems' tutorial
•• intermediateComputational chemistry computational-chemistry -
slides
Introduction to 'Introduction to Galaxy Analyses'
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Tutorial, Documentation
runBioSimulations tutorial and help
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation biosimulators COMBINE OMEX SED-ML Modeling dynamic simulations SBML BNGL -
Tutorial, Documentation
BioSimulators tutorial and help
•• intermediateSystems biology Computational biology Simulation experiment Modelling and simulation Modeling biomodel dynamic simulations COMBINE OMEX SED-ML SBML BNGL -
examples, Tutorial, Jupyter notebook, API reference
DE-Sim examples, tutorials, and documentation
••• advancedSimulation experiment Computer science Mathematics Computational biology Modelling and simulation Visualisation data-driven modeling Computational modelling discrete-event simulation DES object-oriented programming Python data visualization Data Science -
Documentation
BioSimulations tutorial and help
•• intermediateComputational biology Systems biology Simulation experiment Visualisation Modelling and simulation SystemsBiology ComputationalBiology Computational modelling Modeling Biomodelling Model Kinetic modeling SED-ML COMBINE