Training materials
Authors: Janick Mathys or Boris Steipe or Personalized Health Informatics Group or Wolfgang Maier
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hands-on tutorial
R introduction
• beginnerR script Software engineering data visualisation programming -
Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
hands-on tutorial
Hands-on for 'Pox virus genome analysis from tiled-amplicon sequencing data' tutorial
••• advancedGenetic variation variant-analysis virology one-health -
hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
e-learning
Basic statistics in Prism
• beginnerStatistics and probability statistics -
e-learning
Basic statistics theory
• beginnerStatistics and probability statistics -
hands-on tutorial
Hands-on for 'Avian influenza viral strain analysis from gene segment sequencing data' tutorial
•• intermediateGenetic variation variant-analysis virology -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization -
hands-on tutorial
Hands-on for 'Somatic Variant Discovery from WES Data Using Control-FREEC' tutorial