hands-on tutorial
Hands-on for 'Somatic Variant Discovery from WES Data Using Control-FREEC' tutorial
The questions this addresses are:
- What are the specific challenges in locating human Copy Number Variances (hCNVs)?
- How to preprocess the sequenced reads for hCNVs detection?
- How can you detect the hCNVs in/from tumor and normal tissue of the same individual?
- How can you visualise the hCNVs' findings and compare them for specific regions?
The objectives are:
- Use Control-Freec for hCNV Identefication in tumor tissue.
- Visualise the detected hCNVs in specific chromosomes.
Licence: Creative Commons Attribution 4.0 International
Keywords: variant-analysis
Target audience: Students
Resource type: hands-on tutorial
Contributors: David Salgado, Katarzyna Murat, Khaled Jum'ah, Krzysztof Poterlowicz, Wolfgang Maier
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