Training materials
Difficulty level: Intermediate or Not specified
and Authors: Anna Goldenberg or Jan Slifka or Personalized Health Informatics Group or nsoranzo
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Bioinformatics of Genomic Medicine 2018 Module 7-Identifying Integrative Subtypes and Building Classifiers
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Bioinformatics for Cancer Genomics 2017 Module 9-Clinical Data Integration
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Bioinformatics of Genomic Medicine 2017 Module 7-Patient Similarity Fusion
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Slides
Introduction to Galaxy Analyses - Options for using Galaxy
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Tutorial
Introduction to Galaxy Analyses - Galaxy 101
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Tutorial
Introduction to Galaxy Analyses - From peaks to genes
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Introduction to Galaxy Analyses - Introduction to Galaxy