Chip-seq: Discovering motifs in peaks with RSAT

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The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research infrastructure, ELIXIR.

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Chip-seq: Discovering motifs in peaks with RSAT

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Read mapping: from raw reads to aligned reads.
Peak calling: from aligned reads to regions/peaks of high read density.
ChIP-seq annotation
Identification of genes related to the peaks.
Profiles of ChIP-seq reads around reference points (TSS, histone marks,).
Functional enrichment of the genes related to the peaks.

Keywords: Chip Seq, Motif Analysis, NGS

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