Training materials
Target audience: Life scientists or Post-Doctoral Fellows or Staff or beginner bioinformaticians or bioinformaticians or post-docs
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Slides
Life Sciences Research Data Management 2023 Course by ELIXIR Norway
• beginnerData management Data submission, annotation, and curation Data handling Deposition Data retrieval -
hands-on tutorial
Gentle Introduction to Python
• beginnerPython script Software engineering Programming Python -
hands-on tutorial
Explore Protein Structures with ChimeraX
• beginnerProtein structure analysis Sequence analysis Structure visualisation ChimeraX Protein Structure analysis -
hands-on tutorial
Introduction to Research Data Management
• beginnerData quality management Data submission, annotation, and curation Research Data Management Research Publishing -
hands-on tutorial
Introduction to Git and Github
• beginnerSoftware engineering Git Github Version control -
Online material, hands-on tutorial
Introduction to Docker and Singularity
• beginnerReproducibility Container Singularity -
hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
slides, R Shiny application
Proteomics Data Analysis (PDA)
•• intermediateProteomics proteomics quantitative proteomics -
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow -
Training materials
Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide
• beginnerBioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material