Scientific topics: Gene expression and microarray or Computer science
Expanding the SPHN RDF Schema is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...
Scientific topics: Ontology and terminology, Medical informatics, FAIR data, Data management, Computer science
Operations: Editing, Ontology visualisation, Visualisation, Data handling
Keywords: Clinical data, Data semantics, FAIR, Ontology editing, Protegé, RDF, OWL
Resource type: Video, Training materials, E-learning
The RDF and SPARQL training primer was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...
Scientific topics: Computer science, Data management, FAIR data, Medical informatics, Ontology and terminology
Operations: Query and retrieval, Database search, Data handling, Data retrieval
Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, Triplestore, Ontology
Resource type: Video, Training materials, E-learning
This video was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and serves as an introduction to the main standards used within the [SPHN Interoperability...
Scientific topics: Ontology and terminology, Medical informatics, FAIR data, Data management, Computer science
Operations: Standardisation and normalisation, Data handling
Keywords: Clinical data, Data semantics, FAIR, Standards, Ontology, SNOMED CT, LOINC, ATC, CHOP, ICD
Resource type: Video, Training materials, E-learning
RDF Schema and Data Visualization is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...
Scientific topics: Data visualisation, Medical informatics, FAIR data, Data management, Computer science
Operations: Ontology visualisation, Visualisation, Data retrieval, Data handling, Query and retrieval
Keywords: Clinical data, SPARQL, Data visualization, RDF, Knowledge graph, GraphDB, Mock data
Resource type: Video, Training materials, Mock data, E-learning
Validate Graph Data with SHACL is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...
Scientific topics: Computer science, Data management, FAIR data, Medical informatics
Operations: Data handling, Validation
Keywords: Clinical data, SHACL, Data validation, RDF, Knowledge graph, GraphDB, RDF, RDF graph validation
Resource type: Video, Training materials, E-learning
How to use Python and R with RDF Data is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centred around the [SPHN Interoperability...
Scientific topics: Medical informatics, FAIR data, Data management, Computer science
Operations: Data retrieval, Data handling, Query and retrieval
Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, Python, R, GraphDB
Resource type: Video, Training materials, Mock data, E-learning
Querying Data with SPARQL is a training that was developed in the context of the Swiss Personalized Health Network (SPHN) initiative and is part of a series of trainings centered around the [SPHN Interoperability...
Scientific topics: Computer science, Data management, FAIR data, Medical informatics
Operations: Query and retrieval, Database search, Data handling, Data retrieval
Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, SNOMED CT, LOINC
Resource type: Video, Training materials with mock data, E-learning
Materials created at the Machine Learning and BioStatistics hackathon organised by ELIXIR-GR (CERTH) in October and November 2020.
Scientific topics: Computer science, Statistics and probability, Machine learning
Keywords: machine learning, biostatistics, eLearning, EeLP
Resource type: Training materials
Materials developed at the HPC hackathon hosted by ELIXIR-SI (UL) in May and June 2021.
Scientific topics: Computer science
Keywords: HPC, high-performance computing, eLearning, EeLP
Resource type: Training materials
Materials developed at the Containers and Workflows hackathon organised by ELIXIR-BE (VIB) in February and April 2021.
Scientific topics: Computer science
Keywords: Containers, Workflows, eLearning, EeLP
Resource type: Training materials
ELIXIR AAI is an ELIXIR Compute Platform service that other services can use to authenticate their users and manage their access rights.
In the ELIXIR AAI Tas, we are preparing regular Community engagement meetings where we would like to share and discuss together new AAI needs,...
Scientific topics: Computer science
Keywords: AAI, IAM, Authentication, authorisation
Resource type: Documentation, Presentation
DE-Sim is an open-source, Python-based object-oriented discrete-event simulation (DES) tool that makes it easy to use large, heterogeneous datasets and high-level data science tools such as NumPy, Scipy,...
Scientific topics: Computational biology, Mathematics, Computer science, Simulation experiment
Operations: Visualisation, Modelling and simulation
Keywords: data-driven modeling, Computational modelling, discrete-event simulation, DES, object-oriented programming, Python, data visualization, Data Science
Resource type: examples, Tutorial, Jupyter notebook, API reference
ELIXIR AAI is an ELIXIR Compute Platform service that other services can use to authenticate their users and manage their access rights. This is a collection of material for developers of services that want to rely on ELIXIR AAI.
Webinars
| Webinar topic | Link to webinar recording |
...
Scientific topics: Computer science
Keywords: AAI, IAM, Authentication, authorisation
Resource type: Webinar, Presentation, Documentation
High-throughput sequencing data analysis requires new technical competencies and HPC is one of them. SIB has developed an e-learning module in HPC, as part of the ELIXIR-EXCELERATE project. e-learning has the potential to reach a wider audience, in any location and any time, and can be used...
Scientific topics: Biology, Bioinformatics, Computer science
Keywords: High performance computing, high-performance computing
Resource type: Tutorial, Slideshow, e-learning
GitHub Pages are an excellent platform for creating informative websites. The hosting is (currently) free which is a huge plus; the collaborative tools allow teams (that may be widely distributed, fluctuating, and/or voluntary) to contribute in a well-structured, verifiable, and open manner; and...
Scientific topics: Computer science
Keywords: Mark-up, Bioschemas, Interoperability
Resource type: Training materials
Introduction to Linux basic command line
Scientific topics: Computer science
Keywords: Linux basics
This quick tour provides an overview of EMBL-EBI’s functional genomics database ArrayExpress.
This course was updated in December 2015.
An undergraduate-level understanding of biology is an advantage. You may wish to have a look at our Functional genomics: An introduction to EMBL-EBI...
Scientific topics: Gene expression, Gene expression and microarray, Functional genomics
Keywords: Gene Expression
