Training materials
Status: Active
and Scientific topics: DNA methylation or Drug discovery or Sample collections or Software engineering or Systems biology
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Slides
Navigating Licensing in Bioinformatics: Software and Data Perspectives
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Learning pathway
Version control with Git
•• intermediateSoftware engineering Open science Version control -
lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
e-learning
ISMARA: A tool to infer genome-wide regulatory interactions
• beginnerSystems biology Gene regulation Transcription factors and regulatory sites Computational modelling -
Video
Steady State Analysis in COPASI
• beginnerSystems biology Computational biology Simulation experiment Modelling and simulation Visualisation -
course materials, online course, Training materials
Cloud-SPAN Prenomics
• beginnerBioinformatics Software engineering Genomics Query and retrieval Data handling Cloud computing Shell Command line Amazon Web Services genomics HPC Data analysis bioinformatics -
Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
Tutorial, hands-on tutorial
WikiPathways Academy
• beginnerBiology Systems biology Pathway WikiPathways Biocuration -
Jupyter notebooks
Gentle hands-on introduction to Python programming
• beginnerSoftware engineering Python programming