Training materials
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
E-Learning, Training materials
Biology meets Programming - Introduction to Bioinformatics using Python
• beginnerBioinformatics Biology Python Python biologists Programming Data Analysis Sequence Analysis -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
Poster
3DBionotes COVID-19 Structural Hub: A Central Resource for Validation Information and Refined Models
•• intermediateStructural biology Data visualisation Data integration and warehousing Data mining covid-19 Protein models electron microscopy data annotation Web Services (5596) Quality Validation Cryo-Electron Microscopy -
Jupyter notebook
BioExcel Building Blocks (BioBB) Training Material
• beginnermolecular dynamics Docking Modeling life sciences -
examples, Tutorial, Jupyter notebook, API reference
DE-Sim examples, tutorials, and documentation
••• advancedSimulation experiment Computer science Mathematics Computational biology Modelling and simulation Visualisation data-driven modeling Computational modelling discrete-event simulation DES object-oriented programming Python data visualization Data Science -
Jupyter notebook, PDF
Introductory image processing on biological images using python.
• beginner -
Poster, Video
Jalview
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Poster
Validation and Visualisation of Electron Microscopy Density Fits