Training materials
Related resources: Proteomics dataset or Next generation biobanking ontology (NGBO) or Sequence analysis dataset or Data Visualisation (theory) or MGnify
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lessons
Visualisation with RStudio
• beginnerData visualisation Data Visualization R RStudio ggplot2 -
Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
Video
Annotating data using next generation biobanking ontology (NGBO)
• beginnerData integration and warehousing Ontology and terminology Standards Ontologies Data Integration data harmonization Standardised vocabulary -
Tutorial
Proteomics - Peptide and Protein ID using OpenMS tools
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Tutorial
Proteomics - Peptide and Protein Quantification via Stable Isotope Labelling (SIL)
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Tutorial
Proteomics - Peptide and Protein ID using SearchGUI and PeptideShaker
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Tutorial
Proteomics - Secretome Prediction
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Tutorial
Proteomics - Metaproteomics tutorial
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Tutorial
Sequence analysis - RAD-Seq to construct genetic maps
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Tutorial
Sequence analysis - RAD-Seq de-novo data analysis
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