Training materials
Related resources: Input datasets or User Interface and Features dataset or Video of the course or Public Health Alliance for Genomic Epidemiology or ChIP-Seq data analysis dataset
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Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Tutorial
User Interface and Features - Jupyter: Use Jupyter notebooks in Galaxy
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Tutorial
Statistics - Interval-Wise Testing for omics data
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Tutorial
Assembly - Making sense of a newly assembled genome
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Tutorial
Genome Annotation - Genome annotation with Prokka
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Tutorial
Genome Annotation - Genome Annotation
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Tutorial
Variant Analysis - Mapping and molecular identification of phenotype-causing mutations
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Tutorial
Variant Analysis - Microbial Variant Calling
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Tutorial
Epigenetics - Hi-C analysis of Drosophila melanogaster cells using HiCExplorer
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Tutorial
Variant Analysis - Calling variants in non-diploid systems