Training materials
Related resources: Input datasets or Chipster or User Interface and Features dataset or Slides | Introduction to the EGA and sharing se... or GitHub
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lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Slides, Training materials, Series of videos
Single-cell RNA-seq data analysis using Chipster 2022
• beginnerscRNA-seq -
Tutorial
User Interface and Features - Jupyter: Use Jupyter notebooks in Galaxy
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Tutorial
Statistics - Interval-Wise Testing for omics data
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Tutorial
Assembly - Making sense of a newly assembled genome
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Tutorial
Genome Annotation - Genome annotation with Prokka
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Tutorial
Genome Annotation - Genome Annotation
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Tutorial
Variant Analysis - Mapping and molecular identification of phenotype-causing mutations
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Tutorial
Variant Analysis - Microbial Variant Calling