Training materials
Related resources: Data Visualisation (theory) or GPAP: the RD-Connect Genome-Phenome Analysis Pl... or Genome Annotation dataset or Input datasets or RCN Open data policy or User Interface and Features dataset
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lessons
Visualisation with RStudio
• beginnerData visualisation Data Visualization R RStudio ggplot2 -
Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Slides
Data Management Planning workshop for new Life Science Projects
• beginnerData management Deposition Data handling Data retrieval data management plan NeLS TSD metadata sensitive data publication data protection storage identifiers DMP licensing Compliance data life cycle - collect data life cycle - reuse data life cycle - analyse data life cycle - process data life cycle - preserve data life cycle - share data life cycle - plan -
Tutorial
User Interface and Features - Jupyter: Use Jupyter notebooks in Galaxy
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Tutorial
Statistics - Interval-Wise Testing for omics data
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Tutorial
Assembly - Making sense of a newly assembled genome
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Tutorial
Genome Annotation - Genome annotation with Prokka
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Tutorial
Genome Annotation - Genome Annotation
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Tutorial
Variant Analysis - Mapping and molecular identification of phenotype-causing mutations
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Tutorial
Variant Analysis - Microbial Variant Calling