Training materials
Related resources: Associated slides or Event or GPAP: the RD-Connect Genome-Phenome Analysis Pl... or HoloFood Project or Public Health Alliance for Genomic Epidemiology
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Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow -
Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Tutorial
Assembly - Unicycler Assembly
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Tutorial
Transcriptomics - Visualization of RNA-Seq results with CummeRbund
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Tutorial
Development in Galaxy - Visualizations: generic plugins
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Tutorial
Development in Galaxy - Galaxy Webhooks
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Tutorial
Development in Galaxy - Visualizations: charts plugins
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Tutorial
Assembly - De Bruijn Graph Assembly
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