Training materials
Related resources: Assembly dataset or CanCOGeN or DisGeNET: a discovery platform designed to addr... or Input datasets or RStudio basic course or seq-seq-pan
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lessons
Visualisation with RStudio
• beginnerData visualisation Data Visualization R RStudio ggplot2 -
Pan genomics tutorial using Minima2 and seq-seq-pan
• beginnerpan genomics genome alignment Minimap2 alignment seq-seq-pan R visualization genome alignment -
Video, Presentation
Introduction to the EGA and its Ecosystem of Tools
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Video
Applying data standards to the harmonization of COVID-19 datasets from different sources
• beginnerData integration and warehousing Data integration Standards Standardised vocabulary data harmonization Ontologies -
Tutorial
Statistics - Interval-Wise Testing for omics data
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Tutorial
Assembly - Making sense of a newly assembled genome
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Tutorial
Genome Annotation - Genome annotation with Prokka
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Tutorial
Genome Annotation - Genome Annotation
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Tutorial
Variant Analysis - Mapping and molecular identification of phenotype-causing mutations
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Tutorial
Variant Analysis - Microbial Variant Calling