Training materials
Tools: Bioconductor or Ontology Lookup Service or PLAZA dicots or STRING or edgeR
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06: Gene Set Enrichment -- Introduction
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04: Practical: Organizing data with SummarizedExperiment
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03: Core approaches in Bioconductor
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02: Practical: R / Bioconductor and Reproducible Research
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01: Introduction to R and Bioconductor
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Developing robust and efficient code
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Training materials
PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics
•• intermediateGenotype and phenotype Phylogenomics Evolutionary biology Comparative genomics Functional genomics Plant biology Comparison Visualisation Annotation plants Plants bioinformatics genomics Visualisation Annotation -
Working with DNA Sequences
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RNA-Seq Lab: Workflow -- gene-level exploratory analysis and differential expression
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Multiple testing