Register training material
115 materials found

Licence: License Not Specified 

and

Resource type: e-learning  or FREE online course 


Biomacromolecular structures

This course provides an introduction to structural biology and related resources at EMBL-EBI.

Scientific topics: Protein structure analysis, Proteins

Keywords: Biomacromolecules, Macromolecular structures, Polymers, PDBe, X-ray crystallography, NMR spectroscopy, Cryo-electron microscopy

Resource type: e-learning

PhenoMeNal Gateway

The PhenoMeNal Gateway is the portal to your own PhenoMeNal Cloud Research Environment (CRE) containing an array of essential metabolomics applications. This course will give you an overview of PhenoMeNal Gateway, how to create your cloud research environment, and how to use the PhenoMeNal Galaxy...

Scientific topics: Metabolomics, Workflows

Keywords: Metabolomics analysis, Cloud Research Environment, Metabolome, Phenome

Resource type: e-learning

MetaboLights

This quick tour provides a brief introduction to EMBL-EBI's database for Metabolomics experiments and derived information, MetaboLights.

Scientific topics: Metabolomics

Keywords: Metabolites, Metabolome, Mass spectrometry, NMR spectroscopy

Resource type: e-learning

The International Mouse Phenotyping Consortium

The International Mouse Phenotyping Consortium (IMPC) portal provides a freely available comprehensive catalogue of mammalian gene function, using the mouse as a model. By applying a standardised phenotyping pipeline to single-gene knockout mouse lines, the IMPC identifies the physiological...

Scientific topics: Genotype and phenotype, Model organisms

Keywords: Gene function, Mouse models, IMPC, Mammalian Phenotype Ontology, Mouse knockouts, CRISPR

Resource type: e-learning

UniChem

This quick tour provides a brief introduction to UniChem, a compound identifier mapping service. It covers the scientific principles behind the tool, and outlines the use of UniChem and UniChem 'Connectivity Search' to directly locate identical and related molecules in various sources.

Scientific topics: Chemical biology, Small molecules

Keywords: Chemical compounds, Chemical structures, InChIKeys

Resource type: e-learning

Phylogenetics

This course provides a basic introduction to the field of phylogenetics, with an emphasis on how to read and interpret phylogenetic trees.  

Scientific topics: Phylogenetics

Keywords: Evolutionary relationships, Phylogeny

Resource type: e-learning

PDBePISA

PDBePISA allows you to explore macromolecular (protein, DNA/RNA and ligand) interfaces and predict the quaternary structure of your protein. This course will show you how to use PDBePISA and what you can do with it.

Scientific topics: Protein structure analysis, Structure prediction

Keywords: Quaternary structure, Macromolecular interfaces, PDBe, Macromolecular structures

Resource type: e-learning

PDBeFold

PDBeFold can be used to identify structural homologues in the PDB. PDBe's Secondary Structure Matching service (SSM) allows you to interactively compare, align and superimpose protein structures in 3D. This course will show you how to use PDBeFold and what you can do with it.

Scientific topics: Structural biology

Keywords: Structural homologues, Structure alignments, Structural comparison, PDBe

Resource type: e-learning

PDBeChem

PDBeChem allows you to search for chemical components (ligands, small molecules and monomers) that appear in PDB entries, and discover which protein structures bind a particular ligand. This course will show you how to use PDBeChem and what you can do with it.

Scientific topics: Structural biology

Keywords: Small molecules, Ligands, PDBe

Resource type: e-learning

PDBe

This course will show you how to explore the structural information in a PDB entry using PDBe - EMBL-EBI's resource for the collection, organisation and dissemination of data on biological macromolecular structures.

Scientific topics: Protein structure analysis

Keywords: Protein function, PDBe, Macromolecular structures

Resource type: e-learning

A journey through bioinformatics

This course will take you on a journey through time and space to provide a taste of the free resources and data that EMBL-EBI has on offer. Join this tour filled with challenges to explore and learn about various databases and resources.

Scientific topics: Bioinformatics

Keywords: introduction, Bioinformatic databases, PDBe

Resource type: e-learning

Proteomics

This course will provide an overview of proteomics and introduce resources related to proteomics that are provided by EMBL-EBI.

Scientific topics: Proteomics, Proteomics experiment

Keywords: Proteomes, Introduction

Resource type: e-learning

Rfam

This quick tour provides a brief introduction to Rfam, the EBI's database of RNA families.

Keywords: non-coding RNA, ncRNA, RNA families

Resource type: e-learning

Metagenomics bioinformatics

Metagenomics, the genomic analysis of microbial communities from samples like water and soil, involves high-throughput sequencing of the microbial DNA, collecting, archiving and re-sharing the genomic data for taxonomic and functional analysis.

Scientific topics: Metagenomic sequencing, Metagenomics, Microbiology, Sequence assembly

Keywords: Microbial DNA

Resource type: e-learning

Network analysis of protein interaction data

This course provides an introduction to the theory and concepts of network analysis. It explores some of the features of protein-protein interaction networks and their implications for biology. Finally, the course discusses the tools and strategies that can be used to build and analyse biological...

Keywords: Network analysis, Protein-protein interaction networks, Systems biology, Graph theory

Resource type: e-learning

Functional genomics

This course will introduce the field of functional genomics and provide an overview of the different resources at the EBI which are related to this field.

Scientific topics: Functional genomics, Gene expression

Keywords: Microarray, High-throughput sequencing

Resource type: e-learning

Protein interactions and their importance

This course will provide an introduction to molecular interactions, their importance and the methodologies use to generate and capture interaction data.

Scientific topics: Protein interactions

Keywords: Network analysis, Protein-protein interaction networks, Systems biology, Molecular interaction

Resource type: e-learning

Expression Atlas

This extended quick tour provides an introduction to Expression Atlas, an open resource for finding information about gene expression across species and biological conditions. Expression Atlas aims to help answer questions such as ‘where is a certain gene expressed?’ or ‘how does its expression...

Scientific topics: Gene expression

Keywords: Gene co-expression, Microarray, Experimental Factor Ontology, Differential expression

Resource type: e-learning

GOA and QuickGO

This quick tour provides a brief introduction to the Gene Ontology (GO), the Gene Ontology Annotation (GOA) project and QuickGO, a web-based browser for viewing GO annotations.

Scientific topics: Ontology and terminology

Keywords: Gene ontology, Gene ontology annotation, Controlled vocabulary

Resource type: e-learning

BioSamples

This quick tour provides a brief introduction to BioSamples data resource, the EMBL-EBI resource that stores and supplies descriptions and metadata about biological samples.

Keywords: Metadata, Reference samples, Biological samples

Resource type: e-learning

Ensembl Genomes (non-chordates)

This quick tour provides a brief introduction to Ensembl Genomes, the non-chordate genome browser.

Keywords: Genome sequencing, Gene transcripts, Variants, Sequence alignments, Non-chordates

Resource type: e-learning

Metabolomics

This course provides a basic introduction into the rapidly emerging field of metabolomics and its importance and applications.

Scientific topics: Metabolomics

Keywords: Small molecules, Metabolites, Metabolome

Resource type: e-learning

UniProt

This course is a guide to the UniProt resource, including what kinds of information it provides and how to access the data using the UniProt website.

Scientific topics: Proteins

Keywords: Protein function, Swiss-Prot, UniProtKB, TrEMBL

Resource type: e-learning

Protein classification

This course will provide an introduction to protein classification and basic concepts, such as proteins families, domains and sequence features.

Scientific topics: Gene and protein families, Proteins

Keywords: Protein classification, Protein families, Protein domains, Protein signatures

Resource type: e-learning

Complex Portal

This quick tour provides a brief introduction to EMBL-EBI's Complex Portal: a manually curated, encyclopedic resource of macromolecular complexes from a number of key model organisms.

Scientific topics: Molecular modelling, Protein interactions, Proteins

Keywords: Macromolecular complexes

Resource type: e-learning

ChEBI

Chemical Entities of Biological Interest (ChEBI) is a user-friendly online chemical dictionary that focuses on the nomenclature, structure, and biological properties of 'small' molecules that may be encountered by anyone working in molecular biology. This course will show you what kind of...

Scientific topics: Chemical biology, Cheminformatics

Keywords: Chemical compounds, Small molecules

Resource type: e-learning

Functional genomics III

In this online course, we will look at why, when, where to submit your functional genomics data. 

Scientific topics: Functional genomics

Keywords: Metadata, Functional genomics resources, Data submission, Microarray, Next-generation sequencing, NGS

Resource type: e-learning

Functional genomics II

This online course introduces common technologies in functional genomics studies, including microarrays and next generation sequencing (NGS), with a special focus on RNA-sequencing (RNA-seq). We look at important considerations when designing your experiments, data analysis methods, and discuss...

Scientific topics: Functional genomics, Gene expression, Genotype and phenotype, Microarray experiment, RNA-Seq

Keywords: Next-generation sequencing, NGS, Real-time PCR, Microarray, Epigenetic modifications, Histone modifications, DNA-protein interaction, RNA-protein interaction

Resource type: e-learning

Functional genomics I

This online course will give you an introduction to functional genomics. We will introduce you to different types of functional genomics studies and discuss best practices when designing your own experiments. We will also explore some examples of how functional genomics is being applied to drug...

Scientific topics: Functional genomics, Gene expression, Genomics

Keywords: Introduction, Gramene database, Designing functional genomics experiments

Resource type: e-learning

MGnify

This quick tour provides a brief introduction to MGnify - a free resource for analysis, visualisation and discovery of microbiome (metagenomic, metatranscriptomic, amplicon and assembly) datasets.

Scientific topics: Metagenomics, Metatranscriptomics, Microbiology

Keywords: Small molecules, Metabolites, Metabolome

Resource type: e-learning