Training materials
Licence: Creative Commons Attribution 4.0 International
and Scientific topics: Chemistry or Epigenomics or Personalised medicine or RNA or Software engineering or Toxicology
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Slides
Navigating Licensing in Bioinformatics: Software and Data Perspectives
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Tutorial
Tutorial on using existing PerMedCoE Building Blocks and workflows
•• intermediateBioinformatics Workflows Personalised medicine Building blocks -
Learning pathway
Version control with Git
•• intermediateSoftware engineering Open science Version control -
Creating InChIKeys for IUPAC names
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course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
hands-on tutorial
Hands-on for 'Python - Coding Style' tutorial
•• intermediateSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Virtual Environments For Software Development' tutorial
•• intermediateSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Python - Type annotations' tutorial
•• intermediateSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Conda Environments For Software Development' tutorial
•• intermediateSoftware engineering data-science conda jupyter-notebook -
hands-on tutorial
Hands-on for 'Python - Multiprocessing' tutorial
••• advancedSoftware engineering data-science jupyter-notebook