Licence: CC0 1.0 or License Not Specified
Introduction to Galaxy Analyses
Pathways explain how the cells in our bodies work. Like a wiring diagram, pathways show the flow of interactions and reactions among molecules that perform all the functions of Life. There are pathways for the metabolism of sugars and the development of the heart. There are also pathways for...
Scientific topics: Systems biology, Biology
Keywords: Pathway
El Centro Nacional de Análisis Genómico (CNAG-CRG) y la European Genome-Phenome Archive (EGA) organizan un curso práctico sobre el uso de herramientas para compartir y analizar datos genómicos en el marco del proyecto VEIS - Valorización de EGA para la Industria y la Sociedad.
En el primer...
Scientific topics: Data integration and warehousing, Database management, Genomics
Resource type: Video
Develop your understanding of bioinformatics and SARS-CoV-2 data analysis:
Although testing and sequencing capacity has improved, in low-and-middle-income countries (LMICs) bioinformatics analyses still represent a bottleneck in the implementation of effective viral surveillance...
Keywords: bioinformatics, NGS bioinformatics, Next generation sequencing data analysis, covid-19, sars-cov-2, coronavirus, data-analysis, data visualization, genomics, Genomic data, pipelines, Galaxy, nexstrain
Resource type: FREE online course
Discover how sample strategies can affect scientific research and results:
Sampling is a critical part of research in any field. In studying a disease such as Covid-19, it’s imperative that your sample and sampling methods are best-suited to reflect accurate results.
Supported by expert...
Keywords: metadata, Sequencing, genomics, Genomic data, data quality, scientific quality assurance, data sharing, ethics, data ethics, public health, coronavirus, sars-cov-2, covid-19, data linkage
Resource type: FREE online course
Explore genome sequencing and the SARS-CoV-2 genome:
The course starts with a review of how viruses cause diseases and pandemics, examining the factors that can lead to a public health emergency.
You’ll also get a comprehensive introduction to the SARS-CoV-2 genome structure, and learn...
Keywords: coronavirus, covid-19, sars-cov-2, mutations, Variant calling, Sequencing, pandemic, surveillance, genomics, public health, Genomic data
Resource type: FREE online course
This material is CSC's Rahti basic cloud course which consists of lectures and hands-on exercises on creating and managing virtual resources in OpenShift OKD (Kubernetes). The original material was produced by Shubham Kapoor and Juhani Kataja, and updated by Tewodros Deneke and Alvaro Gonzalez
Keywords: Containers, Kubernetes, Cloud computing
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The concepts and methods are exclusively introduced via case-studies in the life sciences. For every study we elaborate on a concrete research question and then provide a study design, which is followed by data exploration. Next, we will focus on how to model the data and elaborate on the link...
In this tutorial you will get an idea on what Schema.org is and how it is useful
Keywords: schemaorg, markup, structured data, schemaorg, markup, structured data
In this tutorial you will learn what Bioschemas is, what the added value to schema.org.is and what the main elements in Bioschemas are
Keywords: schemaorg, markup, structured data, bioschemas, schemaorg, markup, structured data, bioschemas
With these examples you will get a better understanding of benefits brought by structure data, i.e., schema.org markup
Keywords: schemaorg, markup, structured data, example, schemaorg, markup, structured data, example
In this how-to, we will guide you through the necessary steps for you to select a Bioschemas profile that will be later used to add mark up to your own resources
Keywords: schemaorg, markup, structured data, bioschemas profile, schemaorg, markup, structured data, bioschemas profile
In this how-to, we will guide you through the necessary steps for you to update a profile, i.e.,create and publish a new draft profile, you need some knowledge on spreadsheets, GitHub, git and Jekyll.
Keywords: schema.org, markup, structured data, bioschemas profile, schema.org, markup, structured data, bioschemas profile
In this how-to, we will guide you through the necessary steps to create a new Bioschemas profile.
Keywords: schema.org, markup, structured data, bioschemas profile, schema.org, markup, structured data, bioschemas profile
This guide will show you how to check your deployed markup, both locally and what is retrieved by external services.
Keywords: schemaorg, JSON-LD, bioschemas
In this how-to, we will guide you through the necessary steps in order to get a JSON-LD markup describing your own resource using a Bioschemas profile
Keywords: schemaorg, markup, structured data, bioschemas, schemaorg, markup, structured data, bioschemas
This guide will show you how to do add Schema.org markup to a GitHub Pages site.
Keywords: schemaorg, TeSS, GitHub pages, schemaorg, TeSS, GitHub pages
This section provides a step-by-step by tutorial on how to develop Building Blocks using the permedcoe package and an application that uses them.
Scientific topics: Personalised medicine, Workflows, Bioinformatics
Keywords: HPC, building blocks
Resource type: Tutorial
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This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind Data Stewardship Wizard, and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make...
Scientific topics: Data management
Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data
Resource type: Presentation
ELIXIR AAI is an ELIXIR Compute Platform service that other services can use to authenticate their users and manage their access rights.
In the ELIXIR AAI Tas, we are preparing regular Community engagement meetings where we would like to share and discuss together new AAI needs,...
Scientific topics: Computer science
Keywords: AAI, IAM, Authentication, authorisation
Resource type: Documentation, Presentation
At the lowest scale, PhysiCell uses BioFVM solver to simulate the chemical microenvironment using partial differential equations which model the diffusion, uptake and secretion of substrates and signalling molecules. At the cell scale, PhysiCell uses mechanical equations to model individual cell...
Scientific topics: Molecular interactions, pathways and networks, Personalised medicine, Simulation experiment
Operations: Modelling and simulation
Keywords: HPC, Biomodelling, cell simulations
Resource type: Webinar
Boolean modelling uses a simple representation of biological entities as either active or inactive, and describes their relations with logical formulas. MaBoSS extends Boolean modelling by adding a notion of continuous time, with the introduction of rates of (in)activation. This enable the...
Scientific topics: Statistics and probability, Molecular interactions, pathways and networks, Personalised medicine, Simulation experiment
Operations: Modelling and simulation
Keywords: HPC, Biomodelling, cell simulations, Boolean
Resource type: Webinar
COBREXA.jl is a new software package to enable the analysis and simulation of large metabolic models by taking advantages of modern HPC infrastructure. Mainly, it advanced the scalability of constraint-based method, using the Julia programing language and its mathematic ecosystem as a base...
Scientific topics: Simulation experiment
Keywords: cell-level simulations, HPC, Biomodelling
Resource type: Webinar