Training materials
Status: Active
and Licence: CC0 1.0 or Creative Commons Attribution Non Commercial Sha... or GNU General Public License v3.0 only
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Bioinformatics, Data Science
Teaching Bioinformatics through the Analysis of SARS-CoV-2
• beginnerBioinformatics SARS-CoV-2 assignments -
Series of videos
Query Expansion services - tutorial
•• intermediateData management Data Query data Query expansion -
Video
Overview of the FAIRsharing.org
• beginnerFAIR data Data management FAIR FAIR principles Data sharing -
Video
FAIRplus FAIRification wizard
• beginnerFAIR data FAIR Data management -
hands-on tutorial
Bulk RNASeq analysis
•• intermediateTranscriptomics Gene expression Differential gene expression profiling Expression analysis Data analysis NGS RNASeq transcriptomics -
hands-on tutorial
A tour of Machine Learning
•• intermediateMachine learning Classification Deep Learning Machine Learning -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization -
Slideshow, Training materials
Prediction of protein structures and complexes with AlphaFold on the HPC
•• intermediateProtein structure analysis Machine learning Structure prediction Structure visualisation Multiple sequence alignment AlphaFold Database (13181) -
Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph SNOMED CT LOINC Interoperability
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