Introducing Bivi.co
Introduction to the Bivi community presented as the introductory talk at the 1st Bivi Annual Meeting.
Created at: 1st BiVi Annual Meeting.
Scientific topics: Phylogenetics, Pathway or network
Keywords: Anatomy Physiology and Atlases, Cells and Organisms, Genome, Molecular, Pathway, Phylogenetics, Populations
Resource type: Video
Introducing Bivi.co
https://bivi.co/content/introducing-bivico
http://tess.elixir-uk.org/materials/introducing-bivi-co
Introduction to the Bivi community presented as the introductory talk at the 1st Bivi Annual Meeting.
Created at: 1st BiVi Annual Meeting.
Prof. Jessie Kennedy
Phylogenetics
Pathway or network
Anatomy Physiology and Atlases, Cells and Organisms, Genome, Molecular, Pathway, Phylogenetics, Populations
2016-12-08
Jalview
Dr James Proctor of the University of Dundee discusses the Jalview tool in the Vis Tools & Bio Challenges session of the 1st BiVi Annual Meeting
Created at: 1st BiVi Annual Meeting.
Scientific topics: Phylogenetics
Keywords: Genome, Molecular, Phylogenetics
Resource type: Poster, Video
Jalview
https://bivi.co/content/jalview
http://tess.elixir-uk.org/materials/jalview
Dr James Proctor of the University of Dundee discusses the Jalview tool in the Vis Tools & Bio Challenges session of the 1st BiVi Annual Meeting
Created at: 1st BiVi Annual Meeting.
Dr. Jim Procter
Jalview Coordinator
Phylogenetics
Genome, Molecular, Phylogenetics
2016-12-08
Visualization of Epigenetic Data
Esther Rheinbay (http://csb.mgh.harvard.edu/bradley_bernstein) talks about the current challenges of visualizing rapidly expanding epigenetic data and showcases some of the different tools which are available to researchers as part of the Integrative Genome Viewer...
Keywords: Genome, Molecular
Resource type: Video
Visualization of Epigenetic Data
https://bivi.co/presentation/visualization-epigenetic-data
http://tess.elixir-uk.org/materials/visualization-of-epigenetic-data
Esther Rheinbay (http://csb.mgh.harvard.edu/bradley_bernstein) talks about the current challenges of visualizing rapidly expanding epigenetic data and showcases some of the different tools which are available to researchers as part of the Integrative Genome Viewer (http://www.broadinstitute.org/igv/), the Roadmap Epigenomics Project (http://www.roadmapepigenomics.org/) and ECODE project (http://genome.ucsc.edu/encode/). This talk was presented at VIZBI 2013, an international conference series on visualizing biological data (http://vizbi.org). This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.
Genome, Molecular
2017-01-31
Epigenome Browser
Ting Wang (http://wang.wustl.edu/) addresses many of the challenges of navigating the complexity of genomic data and showcases the WashU Epigenome Browser that he is developing. The browser aims to give investigators maximum flexibility to explore and navigate the available genomic data in...
Keywords: Genome, Molecular
Resource type: Slideshow, Video
Epigenome Browser
https://bivi.co/presentation/epigenome-browser
http://tess.elixir-uk.org/materials/epigenome-browser
Ting Wang (http://wang.wustl.edu/) addresses many of the challenges of navigating the complexity of genomic data and showcases the WashU Epigenome Browser that he is developing. The browser aims to give investigators maximum flexibility to explore and navigate the available genomic data in multiple tracks, upload their own data as well as explore long-range interactions. He also highlights the need for the genome browsers to act as community resources and bioinformatics engines with the ability to analyse the mined data. This talk was presented at VIZBI 2013, an international conference series on visualizing biological data (http://vizbi.org). This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.
Dr. Ting Wang
Genome, Molecular
2017-01-31
Browsing 3D Genomes
Jim Zheng (http://www.uthouston.edu/sbmi/faculty-and-staff/jim-zheng.htm) talks about the importance of understanding the 3D structure of genome and gives an introduction into Genome3D framework (http://www.genome3d.org/) which allows integration of multi-scale structural and genomic data within...
Keywords: Genome, Molecular
Resource type: Video
Browsing 3D Genomes
https://bivi.co/presentation/browsing-3d-genomes
http://tess.elixir-uk.org/materials/browsing-3d-genomes
Jim Zheng (http://www.uthouston.edu/sbmi/faculty-and-staff/jim-zheng.htm) talks about the importance of understanding the 3D structure of genome and gives an introduction into Genome3D framework (http://www.genome3d.org/) which allows integration of multi-scale structural and genomic data within 3D. This talk was presented at VIZBI 2013, an international conference series on visualizing biological data (http://vizbi.org). This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.
Genome, Molecular
2017-01-31
Visualizing RNA Structures and Alignments
Paul Gardner (http://www.biol.canterbury.ac.nz/people/gardner.shtml) talks about the challenges of visualization of RNA Structures and Alignments in the context of Rfam database (http://rfam.sanger.ac.uk/), a collection of non-coding RNAs, structured cis-regulatory elements and self-splicing...
Keywords: Genome, Molecular
Resource type: Video
Visualizing RNA Structures and Alignments
https://bivi.co/presentation/visualizing-rna-structures-and-alignments
http://tess.elixir-uk.org/materials/visualizing-rna-structures-and-alignments
Paul Gardner (http://www.biol.canterbury.ac.nz/people/gardner.shtml) talks about the challenges of visualization of RNA Structures and Alignments in the context of Rfam database (http://rfam.sanger.ac.uk/), a collection of non-coding RNAs, structured cis-regulatory elements and self-splicing RNAs. This talk was presented at VIZBI 2013, an international conference series on visualizing biological data (http://vizbi.org). This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.
Genome, Molecular
2017-01-31
Non-coding RNA
Gisela Storz (http://irp.nih.gov/pi/gisela-storz) talks about the reliability and co-relation of anti-sense RNA sequence data. Comparison of RNA seq data across different experiments and from various sources reveals some discrepancies and lack of overlap. While the majority of RNA seq data is...
Keywords: Genome, Molecular
Resource type: Video
Non-coding RNA
https://bivi.co/presentation/non-coding-rna
http://tess.elixir-uk.org/materials/non-coding-rna
Gisela Storz (http://irp.nih.gov/pi/gisela-storz) talks about the reliability and co-relation of anti-sense RNA sequence data. Comparison of RNA seq data across different experiments and from various sources reveals some discrepancies and lack of overlap. While the majority of RNA seq data is robust and reliable, low abundance transcripts can be difficult to account for and the variations in experimental as well as computational conditions can lead to vastly different data.This talk was presented at VIZBI 2013, an international conference series on visualizing biological data (http://vizbi.org). This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.
Genome, Molecular
2017-01-31
Visualizing Protein Structures and Features
Sean O'Donoghue (http://odonoghuelab.org) talks about molecular spatial data and the emerging issue of sequence-structure gap mainly due to experimental difficulties in obtaining reliable (or any) structure information for a given protein. In his talk, he also gives a brief demonstration of...
Keywords: Molecular
Resource type: Video
Visualizing Protein Structures and Features
https://bivi.co/presentation/visualizing-protein-structures-and-features
http://tess.elixir-uk.org/materials/visualizing-protein-structures-and-features
Sean O'Donoghue (http://odonoghuelab.org) talks about molecular spatial data and the emerging issue of sequence-structure gap mainly due to experimental difficulties in obtaining reliable (or any) structure information for a given protein. In his talk, he also gives a brief demonstration of Aquaria (http://aquaria.ws), a web-based 3D molecular structure visualization tool that combines data from various databases and allows investigators to easily view and explore proteins and protein-protein interactions.This talk was presented at VIZBI 2013, an international conference series on visualizing biological data (http://vizbi.org). This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.
Dr. Sean I O’Donoghue
Molecular
2017-01-31
Comparison and assemblies
Thomas Ferrin (http://www.cgl.ucsf.edu/home/tef/) talks about visualization tools for interactive modeling of biological structures with an emphasis on Chimera (http://www.cgl.ucsf.edu/chimera/), an extensible molecular modeling software.This talk was presented at VIZBI 2013, an international...
Keywords: Molecular
Resource type: Video
Comparison and assemblies
https://bivi.co/presentation/comparison-and-assemblies
http://tess.elixir-uk.org/materials/comparison-and-assemblies
Thomas Ferrin (http://www.cgl.ucsf.edu/home/tef/) talks about visualization tools for interactive modeling of biological structures with an emphasis on Chimera (http://www.cgl.ucsf.edu/chimera/), an extensible molecular modeling software.This talk was presented at VIZBI 2013, an international conference series on visualizing biological data (http://vizbi.org). This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.
Prof. Thomas Ferrin
Molecular
2017-01-31
Evolution of Protein Structure and Function
Ian Sillitoe (http://orengogroup.info/) talks about the protein structure classification with particular emphasis on superfamily-centric taxonomy which is used in the CATH (http://www.cathdb.info/) database.This video was filmed and distributed with permission under a Creative Commons...
Keywords: Molecular
Resource type: Video
Evolution of Protein Structure and Function
https://bivi.co/presentation/evolution-protein-structure-and-function
http://tess.elixir-uk.org/materials/evolution-of-protein-structure-and-function
Ian Sillitoe (http://orengogroup.info/) talks about the protein structure classification with particular emphasis on superfamily-centric taxonomy which is used in the CATH (http://www.cathdb.info/) database.This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.
Molecular
2017-01-31
Data visualization in proteomics
Martin Miller talks about visualization of proteome data with particular emphasis on modeling phosphorylation sites. He gives a brief introduction into different methods for the analysis of the single cell proteome from antibody-based methods to mass spectrometry and fluorescence tagging. With...
Keywords: Molecular
Resource type: Video
Data visualization in proteomics
https://bivi.co/presentation/data-visualization-proteomics
http://tess.elixir-uk.org/materials/data-visualization-in-proteomics
Martin Miller talks about visualization of proteome data with particular emphasis on modeling phosphorylation sites. He gives a brief introduction into different methods for the analysis of the single cell proteome from antibody-based methods to mass spectrometry and fluorescence tagging. With the onset of targeted and shot-gun mass spectrometry, there is an increasing amount of proteomics data which will need to be classified, integrated and available for analysis in a meaningful and accessible manner.This video was filmed and distributed with permission under a Creative Commons license.
Created at: VIZBI 2013.
Molecular
2017-01-31
Making Science Beautiful
In this presentation David Goodsell reveals the beauty of science through his scientific and artistic endeavors. He explores the visual techniques which have been used to communicate the detail of the molecular biology world to different audiences.David Goodsell (http://bit.ly/DGoodsell) is an...
Keywords: Molecular, Communication
Resource type: Video
Making Science Beautiful
https://bivi.co/presentation/making-science-beautiful
http://tess.elixir-uk.org/materials/making-science-beautiful
In this presentation David Goodsell reveals the beauty of science through his scientific and artistic endeavors. He explores the visual techniques which have been used to communicate the detail of the molecular biology world to different audiences.David Goodsell (http://bit.ly/DGoodsell) is an Associate Professor of Molecular Biology at the Scripps Institute, California Campus.
Created at: VIZBI 2014.
Molecular, Communication
2017-01-31
BiVi theme: Molecular
Prof Michael Sternberg introduces bio-visualisation in the Molecular theme from a user perspective at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Keywords: Molecular
Resource type: Video
BiVi theme: Molecular
https://bivi.co/presentation/bivi-theme-molecular
http://tess.elixir-uk.org/materials/bivi-theme-molecular
Prof Michael Sternberg introduces bio-visualisation in the Molecular theme from a user perspective at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Prof. Michael J E Sternberg
Molecular
2017-02-01
Foldsynth
Prof. Frederic Fol Leymarie discusses the Foldsynth project at 1st BiVi in 2014. A poster presented at the meeting is also included.
Created at: 1st BiVi Annual Meeting.
Keywords: Molecular
Resource type: Poster, Video
Foldsynth
https://bivi.co/presentation/foldsynth
http://tess.elixir-uk.org/materials/foldsynth
Prof. Frederic Fol Leymarie discusses the Foldsynth project at 1st BiVi in 2014. A poster presented at the meeting is also included.
Created at: 1st BiVi Annual Meeting.
Prof. Frederic Fol Leymarie
Ph.D.
Molecular
2017-02-01
BBSRC: Data and Data Visualisation
Michael Ball from BBSRC's closing remarks on Data and Data Visualisation from 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Scientific topics: Phylogenetics, Pathway or network
Keywords: Anatomy Physiology and Atlases, Cells and Organisms, Genome, Molecular, Pathway, Phylogenetics, Populations, Information visualisation
Resource type: Video
BBSRC: Data and Data Visualisation
https://bivi.co/presentation/bbsrc-data-and-data-visualisation
http://tess.elixir-uk.org/materials/bbsrc-data-and-data-visualisation
Michael Ball from BBSRC's closing remarks on Data and Data Visualisation from 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Michael Ball
Phylogenetics
Pathway or network
Anatomy Physiology and Atlases, Cells and Organisms, Genome, Molecular, Pathway, Phylogenetics, Populations, Information visualisation
2017-02-01
Cell lineage visualisation
Dr A J Pretorius discusses Cell-o-pane, a cell lineage visulaisation tool at 1st BiVi in 2014. As assoicated poster also presented a the meeting is included.
Created at: 1st BiVi Annual Meeting.
Keywords: Cells and Organisms, Molecular
Resource type: Video
Cell lineage visualisation
https://bivi.co/presentation/cell-lineage-visualisation
http://tess.elixir-uk.org/materials/cell-lineage-visualisation
Dr A J Pretorius discusses Cell-o-pane, a cell lineage visulaisation tool at 1st BiVi in 2014. As assoicated poster also presented a the meeting is included.
Created at: 1st BiVi Annual Meeting.
Dr. A.J. Pretorius
Cells and Organisms, Molecular
2017-02-01
Visualisation of cross-linking/mass spectrometry data
Colin Combe discusses the visualisation of cross-linking/mass spectrometry data at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Keywords: Molecular
Resource type: Poster, Video
Visualisation of cross-linking/mass spectrometry data
https://bivi.co/presentation/visualisation-cross-linkingmass-spectrometry-data
http://tess.elixir-uk.org/materials/visualisation-of-cross-linking-mass-spectrometry-data
Colin Combe discusses the visualisation of cross-linking/mass spectrometry data at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Dr. Colin Combe
Molecular
2017-02-01
XiNET: A molecular interaction viewer
Poster presentation at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Keywords: Molecular
Resource type: Poster
XiNET: A molecular interaction viewer
https://bivi.co/presentation/xinet-molecular-interaction-viewer
http://tess.elixir-uk.org/materials/xinet-a-molecular-interaction-viewer
Poster presentation at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Dr. Colin Combe
Molecular
2017-02-01
Visualization Approaches for Biomedical Omics Data: Putting It All Together
Dr Nils Gehlenborg gives his keynote at 1st BiVi in 2014. The rapid proliferation of high quality, low cost genome-wide measurement technologies such as whole-genome and transcriptome sequencing, as well as advances in epigenomics and proteomics, are enabling researchers to perform studies that...
Keywords: Genome, Molecular
Resource type: Video
Visualization Approaches for Biomedical Omics Data: Putting It All Together
https://bivi.co/presentation/visualization-approaches-biomedical-omics-data-putting-it-all-together
http://tess.elixir-uk.org/materials/visualization-approaches-for-biomedical-omics-data-putting-it-all-together
Dr Nils Gehlenborg gives his keynote at 1st BiVi in 2014. The rapid proliferation of high quality, low cost genome-wide measurement technologies such as whole-genome and transcriptome sequencing, as well as advances in epigenomics and proteomics, are enabling researchers to perform studies that generate heterogeneous datasets for cohorts of thousands of individuals. A common feature of these studies is that a collection of genome-wide, molecular data types and phenotypic or clinical characterizations are available for each individual. These data can be used to identify the molecular basis of diseases and to characterize and describe the variations that are relevant for improved diagnosis, prognosis and targeted treatment of patients. An example for a study in which this approach has been successfully applied is The Cancer Genome Atlas project (http://cancergenome.nih.gov).In this talk Dr Gehlenborg discusses how visualization approaches can be applied to enable exploration and support analysis of data generated by such studies. Specifically, he reviews techniques and tools for visual exploration of individual omics data types, their ability to scale to large numbers of individuals or samples, and emerging techniques that integrate multiple omics data types for interactive visual analysis. He also examines technical and legal challenges that developers of such visualization tools are facing. To conclude the talk, he outlines research opportunities for the biological data visualization community that address major challenges in this domain.
Created at: 1st BiVi Annual Meeting.
Dr. Nils Gehlenborg
Genome, Molecular
2017-02-02
GeneProf Visualisations
Dr Simon Tomlinson discusses the GeneProf visualisation system at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Keywords: Genome, Molecular
Resource type: Video
GeneProf Visualisations
https://bivi.co/presentation/geneprof-visualisations
http://tess.elixir-uk.org/materials/geneprof-visualisations
Dr Simon Tomlinson discusses the GeneProf visualisation system at 1st BiVi in 2014.
Created at: 1st BiVi Annual Meeting.
Dr. Simon Tomlinson
Genome, Molecular
2017-02-02
BiVi theme: Molecular - Structural molecular graphics
Prof Michael Sternberg introduces the Molecular bio-visualsation session at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.
Keywords: Molecular
Resource type: Slideshow
BiVi theme: Molecular - Structural molecular graphics
https://bivi.co/presentation/bivi-theme-molecular-structural-molecular-graphics
http://tess.elixir-uk.org/materials/bivi-theme-molecular-structural-molecular-graphics
Prof Michael Sternberg introduces the Molecular bio-visualsation session at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.
Prof. Michael J E Sternberg
Molecular
2017-02-03
Interacting with large biomolecules using haptic feedback
Dr Stephen Laycock describes using InteractinHaptiMOL to interact with large biomolecules using haptic feedback at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.
Keywords: Molecular
Resource type: Slideshow
Interacting with large biomolecules using haptic feedback
https://bivi.co/presentation/interacting-large-biomolecules-using-haptic-feedback
http://tess.elixir-uk.org/materials/interacting-with-large-biomolecules-using-haptic-feedback
Dr Stephen Laycock describes using InteractinHaptiMOL to interact with large biomolecules using haptic feedback at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.
Dr. Stephen David Laycock
Molecular
2017-02-03
BioJS
Dr Manuel Corpas discusses the BioJS Javascript component library at the 1st BiVi Annual Meeting in 2014.
Created at: 1st BiVi Annual Meeting.
Scientific topics: Phylogenetics, Pathway or network
Keywords: Anatomy Physiology and Atlases, Genome, Molecular, Pathway, Phylogenetics
Resource type: Video
BioJS
https://bivi.co/presentation/biojs
http://tess.elixir-uk.org/materials/biojs-6f4125d4-aca1-407d-b0c7-02345f3b3900
Dr Manuel Corpas discusses the BioJS Javascript component library at the 1st BiVi Annual Meeting in 2014.
Created at: 1st BiVi Annual Meeting.
Dr. Manuel Corpas
Phylogenetics
Pathway or network
Anatomy Physiology and Atlases, Genome, Molecular, Pathway, Phylogenetics
2016-12-08
Visualization of Biomolecular Structures: State of the Art
Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a focus on applications in structural biology. The field heavily relies on...
Keywords: Molecular, Information visualisation
Resource type: Slideshow
Visualization of Biomolecular Structures: State of the Art
https://bivi.co/presentation/visualization-biomolecular-structures-state-art
http://tess.elixir-uk.org/materials/visualization-of-biomolecular-structures-state-of-the-art
Structural properties of molecules are of primary concern in many fields. This report provides a comprehensive overview on techniques that have been developed in the fields of molecular graphics and visualization with a focus on applications in structural biology. The field heavily relies on computerized geometric and visual representations of three-dimensional, complex, large, and time-varying molecular structures. The report presents a taxonomy that demonstrates which areas of molecular visualization have already been extensively investigated and where the field is currently heading. It discusses visualizations for molecular structures, strategies for efficient display regarding image quality and frame rate, covers different aspects of level of detail, and reviews visualizations illustrating the dynamic aspects of molecular simulation data. The report concludes with an outlook on promising and important research topics to enable further success in advancing the knowledge about interaction of molecular structures.Categories and Subject Descriptors (according to ACM CCS): I.3.5 [Computer Graphics]: Computational Geometry and Object Modeling-Curve, surface, solid, and object representations
Created at: EuroVis 2015.
Barbara Kozlikova
Michael Krone
Molecular, Information visualisation
2017-02-28
Foldsynth: From proteins to DNA
Prof Frederic Fol Leymarie demonstrates Foldsynth 2.0 visualisation tool at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.
Keywords: Molecular
Resource type: Video
Foldsynth: From proteins to DNA
https://bivi.co/presentation/foldsynth-proteins-dna
http://tess.elixir-uk.org/materials/foldsynth-from-proteins-to-dna
Prof Frederic Fol Leymarie demonstrates Foldsynth 2.0 visualisation tool at 2nd BiVi in 2015.
Created at: 2nd BiVi Annual Meeting.
Prof. Frederic Fol Leymarie
Ph.D.
Molecular
2017-02-03
Art and Science: A partnership catalyzing discovery in biomedicine
A 3rd BiVi 2017 Keynote Presentation by Bang Wong, Broad Institute of MIT & Harvard and Department of Art as Applied to Medicine, Johns Hopkins University School of MedicineChaired by: Geoff BartonThe data generated by the biomedical research community hold tremendous potential to inform our...
Scientific topics: Phylogenetics, Pathway or network
Keywords: Anatomy Physiology and Atlases, Cells and Organisms, Genome, Molecular, Pathway, Phylogenetics, Populations, Communication, Information visualisation
Resource type: Video
Art and Science: A partnership catalyzing discovery in biomedicine
https://bivi.co/presentation/art-and-science-partnership-catalyzing-discovery-biomedicine
http://tess.elixir-uk.org/materials/art-and-science-a-partnership-catalyzing-discovery-in-biomedicine
A 3rd BiVi 2017 Keynote Presentation by Bang Wong, Broad Institute of MIT & Harvard and Department of Art as Applied to Medicine, Johns Hopkins University School of MedicineChaired by: Geoff BartonThe data generated by the biomedical research community hold tremendous potential to inform our understanding and treatment of disease. The challenge is to ensure that technical and non-technical researchers can access, use and learn from this wealth of data and analytical resources. Bang will present examples of solutions developed at the Broad Institute that draw on art and design to enable scientific discovery.Bang Wong is the creative director of the Broad Institute of MIT & Harvard and an adjunct assistant professor in the Department of Art as Applied to Medicine at the Johns Hopkins University School of Medicine. His work focuses on the design and development of computation-visualization tools to meet the analytical challenges of research data. He leads the data visualization initiative at the Broad and is the founding author of Points of View published by Nature Methods, a series of articles that focus on the fundamental aspects of data presentation in science.
Created at: 3rd BiVi Annual Meeting (2017).
Bang Wong
Phylogenetics
Pathway or network
Anatomy Physiology and Atlases, Cells and Organisms, Genome, Molecular, Pathway, Phylogenetics, Populations, Communication, Information visualisation
2017-05-12
EzMol and BioBlox: From Resources for Protein Modelling to Educational Computer Games
In this talk Michael Sternberg of Imperial reports how their research on protein modelling has led to the development of computer games with a role in scientific education. At Imperial, Chris Reynolds has developed a web-based molecular graphics resource EzMol which is a simple-to-use display of...
Keywords: Molecular
Resource type: Video
EzMol and BioBlox: From Resources for Protein Modelling to Educational Computer Games
https://bivi.co/presentation/ezmol-and-bioblox-resources-protein-modelling-educational-computer-games
http://tess.elixir-uk.org/materials/ezmol-and-bioblox-from-resources-for-protein-modelling-to-educational-computer-games
In this talk Michael Sternberg of Imperial reports how their research on protein modelling has led to the development of computer games with a role in scientific education. At Imperial, Chris Reynolds has developed a web-based molecular graphics resource EzMol which is a simple-to-use display of protein structures. In collaboration with Frederic Fol Leymarie, William Latham and their team at Goldsmiths, we have developed the BioBlox suite of scientific-based computer games based around protein docking. BioBox3D is a serious crowd-sourced game for predicting protein/protein docking. BioBlox2D is a fun-to-play game with scientific content for phone/tablet inspired by the recognition between proteins and small molecules. Finally, BioBloxVR is a virtual reality environment for protein docking inspired by BioBlox3D. We are exploring the opportunities for EzMol and BioBlox as educational resources. The projects were supported by the BBSRC.
Created at: 3rd BiVi Annual Meeting (2017).
Prof. Michael J E Sternberg
Molecular
2017-05-15
XiGUI- Visual Interface to Cross-Linking Mass Spectrometry Data
Poster presentation at 3rd BiVi in April 2017.
Created at: 3rd BiVi Annual Meeting (2017).
Keywords: Molecular
Resource type: Poster
XiGUI- Visual Interface to Cross-Linking Mass Spectrometry Data
https://bivi.co/presentation/xigui-visual-interface-cross-linking-mass-spectrometry-data
http://tess.elixir-uk.org/materials/xigui-visual-interface-to-cross-linking-mass-spectrometry-data
Poster presentation at 3rd BiVi in April 2017.
Created at: 3rd BiVi Annual Meeting (2017).
Dr. Martin Graham
Molecular
2017-05-30