Register training material
44 materials found

Keywords: R-programming  or admin 


Hands-on for 'Deploying Tailscale/Headscale for private mesh networking' tutorial

The questions this addresses are:
- What is Tailscale?
- When is it useful?
- Is it right for me?

The objectives are:
- Setup a tailnet across a few nodes

Keywords: admin, wireguard, networking

Resource type: hands-on tutorial

Hands-on for 'Deploying Wireguard for private mesh networking' tutorial

The questions this addresses are:
- What is wireguard?
- When is it useful?
- Is it right for me?

The objectives are:
- Setup a wireguard mesh across a few nodes

Keywords: admin, wireguard, networking

Resource type: hands-on tutorial

Hands-on for 'Distributed Object Storage' tutorial

The questions this addresses are:
- How does Galaxy locate data?
- How can I have Galaxy use multiple storage locations?

The objectives are:
- Setup Galaxy with both the Hierarachical and Distributed Object Storages

Keywords: admin, ansible, storage

Resource type: hands-on tutorial

Hands-on for 'Use Singularity containers for running Galaxy jobs' tutorial

The objectives are:
- Configure your Galaxy to use Singularity and BioContainers for running jobs

Keywords: admin, jobs, ansible, git-gat

Resource type: hands-on tutorial

Hands-on for 'Galaxy Interactive Tools' tutorial

The objectives are:
- Understand what Galaxy Interactive Tools are and how they work
- Be aware of the security implications of Interactive Tools
- Have a basic understanding of the Interactive Tools (GxIT/GIE) Proxy, its purpose, and configuration
- Be familiar with wildcard SSL certificates...

Keywords: admin, ansible, interactive-tools

Resource type: hands-on tutorial

Hands-on for 'Enable upload via FTP' tutorial

The questions this addresses are:
- How can I setup FTP to be easy for my users?
- Can I authenticate ftp users with Galaxy credentials?

The objectives are:
- Configure galaxy and install a FTP server.
- Use an Ansible playbook for this.

Keywords: admin, data, git-gat

Resource type: hands-on tutorial

Hands-on for 'Galaxy Database schema' tutorial

The questions this addresses are:
- Running a production Galaxy server, you some times end up in with a situation, where you manually need to interact with the Galaxy database: how do you do that
- How to extract usage information, which can not be gathered using the given report tools
- How...

Keywords: admin

Resource type: hands-on tutorial

Hands-on for 'How I learned to stop worrying and love the systemd' tutorial

The questions this addresses are:
- Unix is supposed to be about FILES™
- What is this systemd stuff?
- Why should I love it?
- I have so many worries!

The objectives are:
- Have an objective understanding of systemd allowing the user to obtain the benefits of this new system
- Realise...

Keywords: admin, ansible, systemd

Resource type: hands-on tutorial

Hands-on for 'Training Infrastructure as a Service (TIaaS)' tutorial

The questions this addresses are:
- How to deploy EU's TIaaS

The objectives are:
- Setup TIaaS
- Request and manage trainings
- Join a training

Keywords: admin, ansible, training, jobs, git-gat

Resource type: hands-on tutorial

Hands-on for 'Data Libraries' tutorial

The questions this addresses are:
- How do data libraries work?
- What are they good for?
- How can I use them?
- How can I setup permissions for them?

The objectives are:
- Setup a data library
- Manage permissions
- Import data from disk

Keywords: admin, ansible, storage, git-gat

Resource type: hands-on tutorial

Hands-on for 'Performant Uploads with TUS' tutorial

The objectives are:
- Setup TUSd
- Configure Galaxy to use it to process uploads

Keywords: admin

Resource type: hands-on tutorial

Hands-on for 'Deploying a compute cluster in OpenStack via Terraform' tutorial

The questions this addresses are:
- What is Terraform?
- In which situations is it good/bad?
- How to use it for managing your VM cluster

The objectives are:
- Learn Terraform basics
- Launch a VM with Terraform
- Launch and tear down a cluster with Terraform

Keywords: admin, terraform, deploying, cloud

Resource type: hands-on tutorial

Hands-on for 'Reference Data with CVMFS without Ansible' tutorial

The objectives are:
- Have an understanding of what CVMFS is and how it works
- Install and configure the CVMFS client on a linux machine and mount the Galaxy reference data repository
- Configure your Galaxy to use these reference genomes and indices

Keywords: admin

Resource type: hands-on tutorial

Hands-on for 'Upgrading Galaxy' tutorial

The questions this addresses are:
- How can I find which version of Galaxy I'm running?
- How do I upgrade the Galaxy server to the latest version?

The objectives are:
- Understand how to find the current Galaxy server version you are using
- How to find the latest release version
- How...

Keywords: admin, ansible

Resource type: hands-on tutorial

Hands-on for 'Automation with Jenkins' tutorial

The questions this addresses are:
- What sort of tasks should be automated?
- What are my options for automation?
- How can I automate repetitive tasks?

The objectives are:
- Setup Jenkins
- Setup a simple job
- Automate running of the Galaxy playbook
- Secure Jenkins

Keywords: admin, ansible, automation

Resource type: hands-on tutorial

Hands-on for 'Reference Data with CVMFS' tutorial

The objectives are:
- Have an understanding of what CVMFS is and how it works
- Install and configure the CVMFS client on a linux machine and mount the Galaxy reference data repository
- Configure your Galaxy to use these reference genomes and indices
- Use an Ansible playbook for all of the...

Keywords: admin, ansible, git-gat

Resource type: hands-on tutorial

Hands-on for 'Connecting Galaxy to a compute cluster' tutorial

The questions this addresses are:
- How to connect Galaxy to a compute cluster?
- What are job metrics?
- What sort of information can I collect?
- Where can I find this information?

The objectives are:
- Be familiar with the basics of installing, configuring, and using Slurm
-...

Keywords: admin, jobs, ansible, git-gat

Resource type: hands-on tutorial

Hands-on for 'Mapping Jobs to Destinations' tutorial

The questions this addresses are:
- How can I configure job dependent resources, like cores, memory for my DRM?
- How can I map jobs to resources and destinations

The objectives are:
- Know how to map tools to job destinations
- Be able to use the dynamic job runner to make arbitrary...

Keywords: admin, ansible, jobs, git-gat

Resource type: hands-on tutorial

Hands-on for 'Running Jobs on Remote Resources with Pulsar' tutorial

The questions this addresses are:
- How does pulsar work?
- How can I deploy it?

The objectives are:
- Have an understanding of what Pulsar is and how it works
- Install and configure a RabbitMQ message queueing server
- Install and configure a Pulsar server on a remote linux machine
-...

Keywords: admin, ansible, jobs, git-gat

Resource type: hands-on tutorial

Hands-on for 'External Authentication' tutorial

The questions this addresses are:
- How can I connect Galaxy with CAS, SAML, etc.

The objectives are:
- be familiar with configuring Galaxy to use an upstream (proxy) authentication provider
- be able to log in to your Galaxy server with a file-configured user.

Keywords: admin, authentication

Resource type: hands-on tutorial

Hands-on for 'Galaxy Monitoring with gxadmin' tutorial

The questions this addresses are:
- What is gxadmin
- What can it do?
- How to write a query?

The objectives are:
- Learn gxadmin basics
- See some queries and learn how they help debug production issues

Keywords: admin, monitoring, ansible, git-gat

Resource type: hands-on tutorial

Hands-on for 'Galaxy Monitoring with Telegraf and Grafana' tutorial

The questions this addresses are:
- How to monitor Galaxy with Telegraf
- How do I set up InfluxDB
- How can I make graphs in Grafana?
- How can I best alert on important metrics?

The objectives are:
- Setup InfluxDB
- Setup Telegraf
- Setup Grafana
- Create several charts

Keywords: admin, ansible, monitoring, git-gat

Resource type: hands-on tutorial

Hands-on for 'Galaxy Tool Management with Ephemeris' tutorial

The questions this addresses are:
- How to install, update, and maintain Galaxy tools?
- How to extract a list of tools from a workflow or Galaxy instance?

The objectives are:
- Learn about Ephemeris
- Extract a list of tools from a workflow
- Install these tools on a given Galaxy

Keywords: admin, tools, git-gat

Resource type: hands-on tutorial

Hands-on for 'Galaxy Monitoring with Reports' tutorial

The questions this addresses are:
- How to monitor a Galaxy service with the Reports application?

The objectives are:
- Setup and start the Galaxy reports app.

Keywords: admin, ansible, monitoring, git-gat

Resource type: hands-on tutorial

Hands-on for 'Galaxy Installation on Kubernetes' tutorial

The questions this addresses are:
- How do I deploy Galaxy on Kubernetes using Helm?
- How can I create a simple replica of usegalaxy.org?

The objectives are:
- Have an understanding of how to use Galaxy's Helm chart
- Be able to use Helm to install different flavors of Galaxy for...

Keywords: admin, kubernetes

Resource type: hands-on tutorial

Hands-on for 'Managing Galaxy on Kubernetes' tutorial

The questions this addresses are:
- How do I change Galaxy configs?
- How can I upgrade to a new version?
- How do I rollback my changes?
- How do I scale Galaxy?

The objectives are:
- Have an understanding of how to modify Galaxy configuration
- Be able to upgrade and scale galaxy

Keywords: admin, kubernetes

Resource type: hands-on tutorial

Slides for 'Galaxy Interactive Tools' tutorial

The objectives are:
- Learn the differences between Galaxy Interactive Environments and Galaxy Interactive Tools
- Have an understanding of what Galaxy Interactive Tools are and how they work

Keywords: admin

Resource type: slides

Slides for 'Storage Management' tutorial

The questions this addresses are:
- How does Galaxy locate data?
- How can I have Galaxy use multiple storage locations?

The objectives are:
- Setup Galaxy with both the Hierarachical and Distributed Object Storages

Keywords: admin

Resource type: slides

Slides for 'Terraform' tutorial

The questions this addresses are:
- What is Terraform?
- In which situations is it good/bad?
- How to use it for managing your VM cluster

The objectives are:
- Learn Terraform basics
- Launch a VM with Terraform
- Launch and tear down a cluster with Terraform

Keywords: admin

Resource type: slides

Slides for 'Reference Data with CVMFS' tutorial

The objectives are:
- Have an understanding of what CVMFS is and how it works
- Install and configure the CVMFS client on a linux machine and mount the Galaxy reference data repository
- Configure your Galaxy to use these reference genomes and indices
- Use an ansible playbook for all of the...

Keywords: admin

Resource type: slides