Keywords: Populus-tremula or Genomics
Reference genomes have become central to bioinformatics approaches, and form the core of standard analyses using contemporary sequencing data. However, the use of linear reference genomes, which provide the sequence of one representative genome for a species, is increasingly becoming a limitation...
Keywords: Genomics
Resource type: Documentation, Exercise, Handout, Scripts
This introductory course covers practical aspects of the analysis of differential gene expression by RNAseq, from planning the gathering of sequence data to the generation of tables of differentially expressed gene lists and visualization of results. For this edition of the course, we will also...
Keywords: RNA-Seq, Genomics, RNA
Resource type: Documentation, Exercise, Handout, Scripts
This introductory course covers practical aspects of the analysis of differential gene expression by RNAseq, from planning the gathering of sequence data to the generation of tables of differentially expressed gene lists and visualization of results. For this edition of the course, we will also...
Keywords: RNA-Seq, Genomics, RNA
Resource type: Documentation, Exercise, Handout, Scripts
Reference genomes have become central to bioinformatics approaches, and form the core of standard analyses using contemporary sequencing data. However, the use of linear reference genomes, which provide the sequence of one representative genome for a species, is increasingly becoming a limitation...
Keywords: Genomics
Resource type: Documentation, Exercise, Handout, Scripts
This introductory course covers practical aspects of the analysis of differential gene expression by RNAseq, from planning the gathering of sequence data to the generation of tables of differentially expressed gene lists and visualization of results. We we will also cover some of the initial...
Keywords: RNA-Seq, Genomics, RNA
Resource type: Documentation, Exercise, Handout, Scripts
PanelApp (https://panelapp.genomicsengland.co.uk/) is a database for gene panels for use in disease diagnosis that enables crowdsourcing of expert reviews. This guide provides background, evidence guidelines and a tutorial of how to use the review tool in PanelApp to provide your expert review of...
Scientific topics: Rare diseases, Genomics
Keywords: Gene lists, Genomics, human disease, Biocuration
Resource type: knowledgebase
Materials from the ELIXIR workshop “ELIXIR TtR course: Basic genomics using advanced analysis tools”, Nov 5-6 2018 at the University of Ljubljana, Faculty of Medicine, Ljubljana, Slovenia
Scientific topics: Genomics
Keywords: Galaxy, training, Genomics, eLearning, EeLP
Resource type: course materials, Training materials, Slides
This Bioinformatics Introductory Module for self-study was designed for future students of the Molecular Mechanisms of Disease (MMD) master’s program at Radboud University Medical Centre. To level out the starting differences in bioinformatics knowledge between this incoming heterogeneous group...
Keywords: Bioinformatics, Genome browsing, Genomics, Protein structure
Clinical Bioinformatics I is a 10 credit module of the new MSc in Clinical Bioinformatics, delivered by Nowgen/NGRL and the University of Manchester in the UK. Clinical Bioinformatics is one of the streams of the NHS Scientific Training Programme (STP). The programme is a mixture of work...
Keywords: Clinical bioinformatics, Genomics, Introduction bioinformatics