Training materials
Scientific topics: Computer science or Proteomics or Software engineering
and Keywords: John Innes Centre or Python or Shell
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ucdavis-bioinformatics-training/2020-Bioinformatics_Prerequisites_Workshop
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GTPB/IBIP19
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hands-on tutorial
Gentle Introduction to Python
• beginnerPython script Software engineering Programming Python -
course materials, Online material, Training materials
Cloud-SPAN Genomics
• beginnerBioinformatics Software engineering Genomics DNA polymorphism Workflows Data architecture, analysis and design Shell Command line Cloud computing HPC Data analysis High performance computing -
course materials, online course, Training materials
Cloud-SPAN Prenomics
• beginnerBioinformatics Software engineering Genomics Query and retrieval Data handling Cloud computing Shell Command line Amazon Web Services genomics HPC Data analysis bioinformatics -
hands-on tutorial
Hands-on for 'SQL with Python' tutorial
•• intermediateSoftware engineering data-science SQL Python jupyter-notebook -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
examples, Tutorial, Jupyter notebook, API reference
DE-Sim examples, tutorials, and documentation
••• advancedSimulation experiment Computer science Mathematics Computational biology Modelling and simulation Visualisation data-driven modeling Computational modelling discrete-event simulation DES object-oriented programming Python data visualization Data Science -
Python for Biologists: Programming for Scientific Computing
• beginnerSoftware engineering Python for Biologists John Innes Centre JIC -
Introduction to R: A software environment for statistical computing
• beginnerStatistics and probability Software engineering John Innes Centre JIC
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