Training materials
Difficulty level: Intermediate
and Scientific topics: Data management or Epigenomics or Gene expression and microarray or Metabolomics
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
hands-on tutorial
Hands-on for 'Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)' tutorial
•• intermediateMetabolomics metabolomics -
Series of videos
Query Expansion services - tutorial
•• intermediateData management Data Query data Query expansion -
Slides, course materials, hands-on tutorial
Organisation and utilisation of hologenomic datasets – course notes
•• intermediateMetatranscriptomics Sample collections Metabolomics Metagenomics hologenomics metagenomics MGnify Workshop -
hands-on tutorial
Hands-on for 'Mass spectrometry: LC-MS preprocessing with XCMS' tutorial
•• intermediateMetabolomics metabolomics -
hands-on tutorial
Hands-on for 'Mass spectrometry imaging: Finding differential analytes' tutorial
•• intermediateMetabolomics metabolomics -
Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF Knowledge graph GraphDB RDF graph validation -
Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science Data management FAIR data Medical informatics Query and retrieval Data handling Data retrieval Clinical data SPARQL Query data RDF Knowledge graph Python R GraphDB -
Presentation
DSW Workshop for Finnish Data Support Personnel
•• intermediateData management DMP DMP tools data stewardship FAIR FAIR data -
Video, Slides, Webinar
DSW Template Development Kit: The Tutorial
•• intermediateData management data stewardship data management plan FAIR data management software tools DMP templates template development
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