Training materials
Contributors: Mark Beaumont or Nene Barry or Stian Soiland-Reyes or Eija Korpelainen
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ekorpela/cloud-vm-workshop
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Carpentries style curriculum
Introduction to Workflows with Common Workflow Language
• beginnerWorkflows RNA-Seq analysis cwl commonwl sciworkflows workflows -
Jupyter notebook
BioExcel Building Blocks (BioBB) Training Material
• beginnermolecular dynamics Docking Modeling life sciences -
Presentation
Data publishing and archival
• beginnerData publishing data archiving Data preserving -
Presentation
Practicalities of data handling
• beginnerData security Data acquisition Data management Data handling data encryption data protection setup checksums Data transfer Data storage data organisation -
Documentation, Exercise, Handout, Scripts
PGDH19 - Population Genetics Demographic History: model-based approaches (2019)
•• intermediatePopulation Genomics Phylogenetics -
Documentation, Exercise, Handout, Scripts
PGDH18 - Population Genetics and Demographic History: model-based approaches (2018)
•• intermediatePopulation Genomics Phylogenetics -
Slides, course materials
Introduction to using cloud and containers for training - OpenStack and Docker oriented view
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course materials, Training materials, Documentation
ELIXIR eLearning definitions
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course materials, Training materials, Slides, Video
RNA-seq data analysis using Chipster
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