Training materials
Scientific topics: RNA-Seq or Software engineering
and Contributors: Eija Korpelainen @eija, ekorpelainen@gmail.com or Helena Rasche or Stephan Nylinder
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lessons, e-learning
Introduction to Data Management Practices - Versioning of data and code using Git
• beginnerData management FAIR data Software engineering RStudio CONVERGE README -
hands-on tutorial
Hands-on for 'Python - Subprocess' tutorial
•• intermediateSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'CLI Educational Game - Bashcrawl' tutorial
•• intermediateSoftware engineering data-science game bash jupyter-notebook -
hands-on tutorial
Hands-on for 'Python - Globbing' tutorial
•• intermediateSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'SQL with R' tutorial
•• intermediateSoftware engineering data-science SQL R jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Hands-on for 'SQL with Python' tutorial
•• intermediateSoftware engineering data-science SQL Python jupyter-notebook -
hands-on tutorial
Hands-on for 'Python - Argparse' tutorial
•• intermediateSoftware engineering data-science -
hands-on tutorial
Hands-on for 'Python - Try & Except' tutorial
• beginnerSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Make & Snakemake' tutorial
•• intermediateSoftware engineering data-science -
hands-on tutorial
Hands-on for 'Python - Files & CSV' tutorial
• beginnerSoftware engineering data-science jupyter-notebook