Training materials
Contributors: Allegra Via or Delphine Lariviere or Fotis E. Psomopoulos or Roland Krause or UC Davis Bioinformatics Core Training Page
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hands-on tutorial
Hands-on for 'Introduction to Python' tutorial
• beginnerSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Advanced Python' tutorial
•• intermediateSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'RStudio in Galaxy' tutorial
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hands-on tutorial
Hands-on for 'Use Jupyter notebooks in Galaxy' tutorial
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slides
Slides for 'Essential genes detection with Transposon insertion sequencing' tutorial
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slides
Slides for 'Deeper look into Genome Assembly algorithms' tutorial
•• intermediateSequence assembly assembly -
slides
Slides for 'Unicycler Assembly' tutorial
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Presentation
Data publishing and archival
• beginnerData publishing data archiving Data preserving -
Presentation
Practicalities of data handling
• beginnerData security Data acquisition Data management Data handling data encryption data protection setup checksums Data transfer Data storage data organisation -
Documentation, Exercise, Handout, Scripts
PPB18 - Programming in Python for Biologists (2018)
•• intermediateData retrieval Data handling Bioinformatics Biology Biological databases