Metagenomics data analysis
This course covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics. In addition to covering the analysis of whole genome shotgun sequencing data, the course has also module on community analysis of...
Scientific topics: Metagenomics
Resource type: Video, course materials
Metagenomics data analysis
https://www.csc.fi/web/training/-/metagenomics
http://tess.elixir-uk.org/materials/metagenomics-data-analysis
This course covers metagenomics analysis from quality control, filtering and assembly to taxonomic classification, functional assignment and comparative metagenomics. In addition to covering the analysis of whole genome shotgun sequencing data, the course has also module on community analysis of amplicon sequencing data (16S rRNA). Finally, international databases and standards for storing the data are introduced. The course material includes slides, exercises and lecture videos.
The workshop is organized in collaboration with the ELIXIR EXCELERATE project and PRACE, and it is part of the PRACE Advanced Training Centre activity.
Eija Korpelainen
Nils Peder Willassen
Espen Mikal Robertsen
Erik Hjerde
Rob Finn
Anu Mikkonen
Jenni Hultman
Petri Auvinen
Kimmo Mattila
Maria Lehtivaara
Jarno Tuimala
Eija Korpelainen
Metagenomics