Authors: erasche or Egon Willighagen
This tutorial describes how to use the BridgeDbR package for identifier mapping.
Keywords: ELIXIR RIR, BridgeDb
Workshop of 1.5h where the eNanoMapper ontology and a few uses are discussed. The exercises walk the audience trough the principles, uses, and demonstrates how they can actively work with the ontology.
Scientific topics: Ontology and terminology, Toxicology
Resource type: Tutorial
This tutorial describes how terms can be added to the eNanoMapper ontology.
Keywords: enanomapper, ontologies
Resource type: Tutorial
Book that describes the cheminformatics functionality of the Chemistry Development Kit taking advantage of the Groovy programming language.
Scientific topics: Chemistry, Cheminformatics
Resource type: Book
This tutorial how to statistically analyze microarray data with ArrayAnalysis.org website.
Keywords: ArrayAnalysis.org, microarray
This tutorial describes how nanomaterial data can be added to an eNanoMapper server using a RDF format.
Scientific topics: Database management, Toxicology
Keywords: nanotoxicology, enanomapper, resource description framework, ontology
Resource type: Tutorial
This is a OER around a six day course on using JavaScript to program the life sciences web, but with a focus on the Open PHACTS API.
Scientific topics: Pharmacology, Drug discovery
Tutorial describing how a BridgeDb Identifier Mapping Database (IMS) service can be started and used for gene-variant mapping. It explains how to download the IMS Docker and identifier mapping databases (link sets), load the link sets, and test the web interface.
Scientific topics: Genomics, Genetic variation
Keywords: ELIXIR RIR, BridgeDb
Resource type: Tutorial
Training material from the denBI-organized Metabolomics Winterschool 2018, discussing identifier mapping and pathway analysis.
Scientific topics: Metabolomics
Keywords: Metabolomics, Identifiers, ELIXIR RIR, BridgeDb
Resource type: Tutorial
BridgeDb is a combination of an application programming interface (API), library, and set of data files for mapping identifiers for identical objects [1]. Identifier mapping databases are available for gene products and metabolites. This Bioconductor Vignette explains how to use BridgeDb in the R...
Keywords: ELIXIR RIR, BridgeDb
Resource type: Tutorial, Vignette
Resources related to configuration and maintenance of Galaxy servers
Questions of the tutorial:
- Why Ansible?
- How and when to use Ansible?
- How to write a role?
- How to leverage community build roles?
Objectives of the tutorial:
- Learn Ansible basics
- Write a simple role
- Install a...
Resource type: Tutorial
A collection of microtutorials explaining data manipulation within Galaxy
Questions of the tutorial:
- How to use the rule based uploader to create complex collections
Objectives of the tutorial:
- Learn about the Rule Based Uploader
Resource type: Tutorial
Tutorial that covers various aspects of working with the eNanoMapper database. It discussed searching, adding, and downloading data from an eNanoMapper database.
Keywords: ontologies, enanomapper
This tutorial describes how terms can be added to the eNanoMapper ontology.
Keywords: enanomapper, ontologies
Galaxy is a great solution to train the bioinformatics concepts: numerous bioinformatics tools are available (almost 5,000 in the ToolShed), it can be used by people without amy computer science skills, it trains to use technology, outlining available resources and efforts that have made them...
Resource type: Slides
This tutorial explains how the eNanoMapper ontology can be browsed with three tools, of which two are online.
Keywords: nanotoxicology, Ontologies, BioPortal, AberOWL, Protégé
Resource type: Tutorial
Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ...
Questions of the tutorial:
- What are Galaxy Interactive Environments (GIEs)?
- How to enable GIEs in Galaxy?
- How to develop your own...
Resource type: Slides
Resources related to configuration and maintenance of Galaxy servers
Resource type: Slides