Training materials
Authors: Manuel Corpas or Eija Korpelainen @eija, ekorpelainen@gmail.com or Daniel Blankenberg or Samaha, Georgina (orcid: 0000-0003-0419-1476) or Personalized Health Informatics Group or Maria Lehtivaara
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WEBINAR: Getting started with RNAseq: Transforming raw reads into biological insights
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
WORKSHOP: Unlocking nf-core - customising workflows for your research
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WEBINAR: Pro tips for scaling bioinformatics workflows to HPC
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Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
WORKSHOP: Make your bioinformatics workflows findable and citable
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Training materials, Series of videos
Visium data analysis (spatially resolved transcriptomics) 2022
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WORKSHOP: RNA-Seq: reads to differential genes and pathways
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Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization -
Video, E-learning
FAIR principles in practice for health data
• beginnerComputer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework FAIR Findability Accessibility Interoperability Reusability