Authors: Kathi Zarnack or stortebecker
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to convert LC-MS/MS raw files?
- How to identify peptides?
- How to identify proteins?
- How to evaluate the results?
Objectives of the tutorial:
- Protein identification from LC-MS/MS raw files.
Resource type: Tutorial
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How can protein N-termini be enriched for LC-MS/MS?
- How to analyze the LC-MS/MS data?
Objectives of the tutorial:
- Run an N-TAILS data analysis.
Resource type: Tutorial
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- What are MS1 features?
- How to quantify based on MS1 features?
- How to map MS1 features to MS2 identifications?
- How to evaluate and optimize the results?
Objectives of the tutorial:
- MS1 feature...
Resource type: Tutorial
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to convert LC-MS/MS raw files?
- How to identify peptides?
- How to identify proteins?
- How to evaluate the results?
Objectives of the tutorial:
- Protein identification from LC-MS/MS raw files.
Resource type: Tutorial
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to predict cellular protein localization based upon GO-terms?
- How to combine multiple localization predictions?
Objectives of the tutorial:
- Predict proteins in the cellular secretome by using...
Resource type: Tutorial
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- What are benefits and drawbacks of different quantitation methods?
- How to choose which quantitation method bests suits my need?
Objectives of the tutorial:
- Choose your quantitation method.
Resource type: Tutorial
Training material for proteomics workflows in Galaxy
Questions of the tutorial:
- How to download protein FASTA databases of a certain organism?
- How to download a contaminant database?
- How to create a decoy database?
- How to combine databases?
Objectives of the tutorial:
- Creation of a...
Resource type: Tutorial