Training materials
Authors: Instituto Gulbenkian de Ciência or Jonathan Karr or Melanie Föll or Nicola Soranzo or erasche
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Tutorial, Documentation
BioSimulators tutorial and help
•• intermediateSystems biology Computational biology Simulation experiment Modelling and simulation Modeling biomodel dynamic simulations COMBINE OMEX SED-ML SBML BNGL -
examples, Tutorial, Jupyter notebook, API reference
DE-Sim examples, tutorials, and documentation
••• advancedSimulation experiment Computer science Mathematics Computational biology Modelling and simulation Visualisation data-driven modeling Computational modelling discrete-event simulation DES object-oriented programming Python data visualization Data Science -
Documentation
BioSimulations tutorial and help
•• intermediateComputational biology Systems biology Simulation experiment Visualisation Modelling and simulation SystemsBiology ComputationalBiology Computational modelling Modeling Biomodelling Model Kinetic modeling SED-ML COMBINE -
Tutorial
Datanator tutorial
• beginnerMolecular biology Cell biology Systems biology Bioinformatics Omics Query and retrieval Filtering genomics Proteomics transcriptomics Metabolomics reaction kinetics Kinetic modeling meta analysis -
Tutorial
Galaxy Server administration - Ansible
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Tutorial
Data Manipulation - Collections: Rule Based Uploader
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Slides
Contributing to the Galaxy Training Material - Creating a new tutorial - Slides
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Slides
Development in Galaxy - Galaxy Interactive Environments
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Slides
Galaxy Server administration - Advanced customisation of a Galaxy instance