Training materials
Difficulty level: Beginner
and Authors: Engy Nasr or Maria Doyle or Philippe Le Mercier
and Resource type: Mock data or e-learning or hands-on tutorial
-
hands-on tutorial
Hands-on for 'Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition' tutorial
• beginnerMetagenomics metagenomics Nanopore data analysis Pathogens detection Phylogenetic tree Heatmap cyoa -
hands-on tutorial
Hands-on for 'Visualization of RNA-Seq results with Volcano Plot' tutorial
• beginnerTranscriptomics transcriptomics -
hands-on tutorial
Hands-on for 'Reference-based RNA-Seq data analysis' tutorial
• beginnerTranscriptomics transcriptomics bulk rna-seq collections drosophila QC cyoa -
hands-on tutorial
Hands-on for 'Quality Control' tutorial
• beginnerSequence analysis sequence-analysis -
e-learning
BLAST and multiple sequence alignment (MSA) programs
• beginnerSequence analysis Blast Multiple sequence alignment -
e-learning
Phylogenetics of animal pathogens: basic principles and applications
• beginnerPhylogenetics Veterinary medicine Animal pathogens