Training materials
Authors: Christine Staiger or David Wishart or Helena Rasche or Our core educator team can be found on our cour... or Personalized Health Informatics Group or The Carpentries
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Video, E-Learning
SPHN Dataset Template: Build an RDF schema from an Excel file
•• intermediateComputer science Data management FAIR data Medical informatics Semantic artifacts generation Automation Clinical data Semantic Framework FAIR RDF RDF graph generation Dataset template -
Video, E-learning
FAIRification of external terminologies
• beginnerComputer science Data management FAIR data Medical informatics Ontology and terminology Clinical data Semantic Framework FAIR Terminology Ontology Versioning of Terminology -
hands-on tutorial
Hands-on for 'Use Apptainer containers for running Galaxy jobs' tutorial
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slides
Slides for 'Server Maintenance: Cleanup, Backup, and Restoration' tutorial
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slides
Slides for 'Galaxy from an administrator's point of view' tutorial
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hands-on tutorial
Hands-on for 'Python - Coding Style' tutorial
•• intermediatedata-science jupyter-notebook -
Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science Data management FAIR data Medical informatics Design Standardisation and normalisation Clinical data Semantic Framework FAIR Concepts design Ontology Semantic inheritance SNOMED CT Conceptualization -
hands-on tutorial
Hands-on for 'Virtual Environments For Software Development' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Python - Type annotations' tutorial
•• intermediatedata-science jupyter-notebook -
hands-on tutorial
Hands-on for 'Conda Environments For Software Development' tutorial
•• intermediatedata-science conda jupyter-notebook