Training materials
Authors: Anna Syme or Erwan Corre or Jessica Kirkpatrick krkptrc2@illinois.edu or Maria Doyle or Marta Lloret Llinares or Praveen Kumar
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Learning pathway
Version control with Git
•• intermediateSoftware engineering Open science Version control -
hands-on tutorial
Hands-on for 'Large genome assembly and polishing' tutorial
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hands-on tutorial
Hands-on for 'Genome Assembly Quality Control' tutorial
•• intermediateSequence assembly assembly quality control -
slides
Slides for 'Genome assembly quality control.' tutorial
• beginnerSequence assembly assembly -
hands-on tutorial
Hands-on for 'Microbial Variant Calling' tutorial
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hands-on tutorial
Hands-on for 'CRISPR screen analysis' tutorial
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hands-on tutorial
Hands-on for 'Genome annotation with Prokka' tutorial
• beginnergenome-annotation prokaryote -
hands-on tutorial
Hands-on for 'Masking repeats with RepeatMasker' tutorial
• beginnergenome-annotation eukaryote -
hands-on tutorial
Hands-on for 'ATAC-Seq data analysis' tutorial
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hands-on tutorial
Hands-on for 'Chloroplast genome assembly' tutorial