Training materials
Authors: Anna Syme or Björn Grüning or Jessica Kirkpatrick krkptrc2@illinois.edu or Marta Lloret Llinares or Nicola Soranzo or bebatut
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Learning pathway
Version control with Git
•• intermediateSoftware engineering Open science Version control -
slides
Slides for 'Server Maintenance: Cleanup, Backup, and Restoration' tutorial
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hands-on tutorial
Hands-on for 'Large genome assembly and polishing' tutorial
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slides
Slides for 'Galaxy from an administrator's point of view' tutorial
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hands-on tutorial
Hands-on for 'Exome sequencing data analysis for diagnosing a genetic disease' tutorial
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hands-on tutorial
Hands-on for 'Microbial Variant Calling' tutorial
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hands-on tutorial
Hands-on for 'Calling variants in diploid systems' tutorial
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hands-on tutorial
Hands-on for 'Genome annotation with Prokka' tutorial
• beginnergenome-annotation prokaryote -
hands-on tutorial
Hands-on for 'Scripting Galaxy using the API and BioBlend' tutorial
• beginnerSoftware engineering dev jupyter-notebook -
hands-on tutorial
Hands-on for 'JavaScript plugins' tutorial