Training materials
Difficulty level: Intermediate
and Authors: Alexander Botzki or Avans Hogeschool or Jan Slifka or Javi Conejero or Maria Christina Maniou
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Tutorial
Tutorial on using existing PerMedCoE Building Blocks and workflows
•• intermediateBioinformatics Workflows Personalised medicine Building blocks -
hands-on tutorial
Hands-on for 'SQL with R' tutorial
•• intermediateSoftware engineering data-science SQL R jupyter-notebook rmarkdown-notebook -
hands-on tutorial
Hands-on for 'SQL with Python' tutorial
•• intermediateSoftware engineering data-science SQL Python jupyter-notebook -
hands-on tutorial
Hands-on for 'Make & Snakemake' tutorial
•• intermediateSoftware engineering data-science -
hands-on tutorial
Hands-on for 'Advanced CLI in Galaxy' tutorial
•• intermediateSoftware engineering data-science bash jupyter-notebook -
hands-on tutorial
Hands-on for 'Plotting in Python' tutorial
•• intermediateSoftware engineering data-science jupyter-notebook -
hands-on tutorial
Hands-on for 'SQL Educational Game - Murder Mystery' tutorial
•• intermediateSoftware engineering data-science game SQL jupyter-notebook -
hands-on tutorial
Hands-on for 'Advanced Python' tutorial
•• intermediateSoftware engineering data-science jupyter-notebook -
Tutorial
Tutorial on developing Building Blocks
•• intermediateBioinformatics Workflows Personalised medicine HPC building blocks -
Training materials
Containers & Workflow pipelines workshop
•• intermediateContainers Nextflow