hands-on tutorial
Hands-on for 'MaxQuant and MSstats for the analysis of TMT data' tutorial
The questions this addresses are:
- How to analyze tandem-mass-tag (TMT) labelled shotgun (DDA) data analysis in MaxQuant and MSstats?
- Which proteins are differentially abundant between KMT9α knock-down and control cells?
The objectives are:
- Learn how to use MaxQuant and MSstats for the analysis of TMT labelled shotgun (DDA) data
- Learn how to create an experimental design template for fractionated data in MaxQuant
- Learn how to create an annotation file for MSstatsTMT
Licence: Creative Commons Attribution 4.0 International
Keywords: proteomics, DDA, TMT, work-in-progress
Target audience: Students
Resource type: hands-on tutorial
Contributors: Klemens Fröhlich, Matthias Fahrner, Melanie Föll
Activity log