hands-on tutorial

Hands-on for 'MaxQuant and MSstats for the analysis of TMT data' tutorial

The questions this addresses are:
- How to analyze tandem-mass-tag (TMT) labelled shotgun (DDA) data analysis in MaxQuant and MSstats?
- Which proteins are differentially abundant between KMT9α knock-down and control cells?

The objectives are:
- Learn how to use MaxQuant and MSstats for the analysis of TMT labelled shotgun (DDA) data
- Learn how to create an experimental design template for fractionated data in MaxQuant
- Learn how to create an annotation file for MSstatsTMT

Licence: Creative Commons Attribution 4.0 International

Keywords: proteomics, DDA, TMT, work-in-progress

Target audience: Students

Resource type: hands-on tutorial

Authors: Klemens Fröhlich, Matthias Fahrner, Melanie Föll

Contributors: Klemens Fröhlich, Matthias Fahrner, Melanie Föll


Activity log