hands-on tutorial

Hands-on for 'M. tuberculosis Variant Analysis' tutorial

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The questions this addresses are:
- How do we detect differences between a set of reads from M. tuberculosis (Mtb) and the Mtb reference genome

The objectives are:
- How should we filter those variants
- How can we predict drug resistance from those variants
- How do we annotate those variants

Licence: Creative Commons Attribution 4.0 International

Keywords: variant-analysis, prokaryote, one-health

Target audience: Students

Resource type: hands-on tutorial

Authors: Peter van Heusden, Simon Gladman, Thoba Lose

Contributors: Peter van Heusden, Simon Gladman, Thoba Lose

Scientific topics: Genetic variation

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