Switzerland
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Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
•• intermediateComputer science, Data management, FAIR data, Medical informatics, Query and retrieval, Data handling, Data retrieval, Clinical data, SPARQL, Query data, RDF, Knowledge graph, Python, R, GraphDB
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Computer Software, workflow
How to use V-pipe (SARS-CoV-2 data)
• beginnerVirology, Genetic variation, Workflows, Variant calling, Alignment, Read pre-processing, coronavirus, NGS bioinformatics, Variant-calling
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Training materials
Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide
• beginnerBioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material
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e-learning
BLAST and multiple sequence alignment (MSA) programs
Blast, E learning, Multiple sequence alignment
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BLAST and multiple sequence alignment (MSA) programs
• beginnerBlast, E learning, Multiple sequence alignment
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e-learning
UNIX Fundamentals
Problem based learning, Programming, Unix
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Tutorial, Slideshow, e-learning
High Performance Computing (HPC) in Life Sciences
• beginnerComputer science, Bioinformatics, Biology, High performance computing, high-performance computing
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e-learning
Phylogenetics of animal viral pathogens
Animal pathogens, E learning, Phylogenetics
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Vital-IT Infrastructure Usage
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Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace
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ViralZone
Phylogenetics of animal viral pathogens
• beginnerAnimal pathogens, E learning, Phylogenetics
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Video, E-learning
FAIR principles in practice for health data
• beginnerComputer science, Data management, FAIR data, Medical informatics, Standardisation and normalisation, Design, Clinical data, RDF, Knowledge graph, Semantic framework, FAIR, Findability, Accessibility, Interoperability, Reusability
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Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
• beginnerData visualisation, Medical informatics, FAIR data, Data management, Computer science, Ontology visualisation, Visualisation, Data retrieval, Data handling, Query and retrieval, Clinical data, SPARQL, Data visualization, RDF, Knowledge graph, GraphDB, Mock data
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Video, Training materials, E-learning
Validate Graph Data with SHACL
•• intermediateMedical informatics, FAIR data, Data management, Computer science, Validation, Data handling, Clinical data, SHACL, Data validation, RDF, Knowledge graph, GraphDB, RDF graph validation
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Video, Training materials, E-learning
Semantic Standards
• beginnerComputer science, Data management, FAIR data, Medical informatics, Ontology and terminology, Data handling, Standardisation and normalisation, Clinical data, Data semantics, FAIR, Standards, Ontology, SNOMED CT, LOINC, ATC, CHOP, ICD, Interoperability
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Video, Training materials, E-learning
Expanding the SPHN RDF Schema
• beginnerOntology and terminology, Medical informatics, FAIR data, Data management, Computer science, Editing, Ontology visualisation, Visualisation, Data handling, Clinical data, Data semantics, FAIR, Ontology editing, Protegé, RDF, OWL
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Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
• beginnerComputer science, Data management, FAIR data, Medical informatics, Ontology and terminology, Query and retrieval, Database search, Data handling, Data retrieval, Clinical data, SPARQL, Query data, RDF, Knowledge graph, Triplestore, Ontology
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Video, Training materials with mock data, e-learning
Querying Data with SPARQL
• beginnerComputer science, Data management, FAIR data, Medical informatics, Data mining, Query and retrieval, Database search, Data handling, Data retrieval, Clinical data, SPARQL, Query data, RDF, Knowledge graph, SNOMED CT, LOINC, Interoperability
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Video, E-Learning
How to create a concept for the SPHN Dataset
• beginnerComputer science, Data management, FAIR data, Medical informatics, Design, Standardisation and normalisation, Clinical data, Semantic Framework, FAIR, Concepts design, Ontology, Semantic inheritance, SNOMED CT, Conceptualization
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Face-to-faceA guided tour through neXtProt
23 February 2023
Streamed, Switzerland
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Face-to-faceFirst Steps with Python in Life Sciences
1 - 3 March 2023
Lausanne, Switzerland
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Face-to-faceIntroduction to High-performance Computing (sciCORE Cluster)
23 May 2023
Streamed, Switzerland
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Face-to-faceIntroduction to High-performance Computing (sciCORE Cluster)
5 December 2023
Streamed, Switzerland
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Face-to-faceIntroduction to High-performance Computing (sciCORE Cluster)
19 September 2023
Streamed, Switzerland
-
Face-to-faceVersion Control with Git
22 - 24 February 2023
Lausanne, Switzerland
-
Face-to-faceMultiomics Data Analysis and Integration
16 - 17 March 2023
Geneva, Switzerland
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Face-to-faceGalaxy Introduction for Life Scientists
25 - 26 April 2023
Bern, Switzerland
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Face-to-faceFirst Steps with R in Life Sciences
8 - 9 June 2023
Lausanne, Switzerland
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Face-to-faceDocker and Singularity for Reproducible Research: Getting Started with Containers
13 October 2023
Streamed, Switzerland
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Face-to-faceUNIX Shell Scripting in Life Sciences
13 - 15 June 2023
Lausanne, Switzerland
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Face-to-faceSubmitting, Finding and Downloading Raw Sequencing Data with ENA
12 June 2023
Berne, Switzerland
-
Face-to-faceBest Practices in Programming
5 - 6 July 2023
Zürich, Switzerland
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Face-to-faceIntroduction to R Shiny
27 April 2023
Streamed, Switzerland
-
Face-to-faceData Visualisation with R
20 - 21 March 2023
Lausanne, Switzerland
-
Face-to-faceApplied Statistics: Data Analysis in Practice
4 - 5 April 2023
Lausanne, Switzerland
-
Face-to-faceFirst Steps with UNIX in Life Sciences
24 August 2023
Lausanne, Switzerland
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Face-to-faceGene Expression made Useful Easily: Tools and Database of Bgee
26 May 2023
Streamed, Switzerland
-
Face-to-faceIntroduction to openBIS
27 June 2023
Streamed, Switzerland
-
Face-to-faceNGS - Quality Control, Alignment, Visualisation
20 - 22 February 2023
Bern, Switzerland
-
Face-to-faceSingle-cell Transcriptomics
6 - 8 March 2023
Streamed, Switzerland
-
Face-to-faceEnrichment Analysis
23 June 2023
Streamed, Switzerland
-
Face-to-faceEnrichment Analysis
1 December 2023
Streamed, Switzerland
-
Face-to-faceFirst Steps in Parallelization with OpenMP
9 May 2023
Streamed, Switzerland
-
Face-to-faceIntroduction to Statistics with R
6 - 9 February 2023
Lausanne, Switzerland
-
Face-to-faceSingle-cell Transcriptomics
3 - 5 July 2023
Bern, Switzerland
-
Face-to-faceEnrichment Analysis
31 March 2023
Streamed, Switzerland
-
Face-to-faceDocker and Singularity for Reproducible Research: Getting Started with Containers
26 April 2023
Streamed, Switzerland
-
Face-to-faceNGS - Genome Variant Analysis
15 - 16 May 2023
Bern, Switzerland
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Face-to-faceBest Practices in High-Perfomance Computing (sciCORE cluster)
14 March 2023
Streamed, Switzerland
Activity log
