EMBL-EBI
Showing 30 materials out of 401
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Training materials, Video
GA4GH Passports and ELIXIR AAI
•• intermediateAAI GA4GH Passports Auhtorisation -
Tutorial
Metagenomics Bioinformatics
Metagenomics MGnify Sequence Analysis Microbiology
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Analysing and visualising microbiome-derived datasets using the MGnify Web API
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Webinar
Ontology Lookup Service (OLS)
Ontology and terminology
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Tutorial
MGnify quick tour
Metagenomics Sequence analysis MGnify Microbiology
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Webinar
EBI Metagenomics: analysing and exploring metagenomics data
Metagenomics MGnify Sequence Analysis Microbiology
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Webinar
Europe PMC: Services for academic authors
Europe PMC ORCID Biomedical Literature
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Webinar
Extracting research evidence from publications
Literature search Biomedical Literature Europe PMC Text mining
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Webinar
Europe PMC: get the most from literature searches
Literature search Life sciences publications Europe PMC
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Webinar
Navigating the data-rich literature: finding evidence in biomedical publications
Europe PMC Biomedical Literature Literature search
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Webinar
Extracting gene-disease evidence from literature, genetics, genomics and more
Europe PMC Open Targets gene-disease relationship Text mining
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Life Science Literature Database, Life Sciences Literature Database
Using Europe PMC for effective literature research
• beginnerLiterature search peer reviewed articles Europe PMC, Preprints Data links Annotations Europe PMC, ORCID -
Recorded webinar
Searching and browsing scientific publications with the new Europe PMC
Literature search Data links preprints
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Webinar
How to Share Text Mining Results in Biology
Europe PMC Text mining Literature search
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Webinar
Effective Literature Research with Europe PMC
• beginnerEurope PMC Biomedical Literature Literature search -
Slides
Literature Searching Skills and Tools
Medical publications Curation strategy PubMed search Literature database search Biocuration Europe PMC
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Webinar
Text mining: Key concepts and applications
Literature search Text mining Europe PMC Biomedical Literature
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Webinar
Europe PMC, programmatically
Literature search Programmatic Access Europe PMC REST API Biomedical Literature
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Webinar
Integrating publications into bioinformatics analysis
Europe PMC REST API Bioinformatic analysis
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Webinar
Preprint discovery 101: Tips & tricks for authors and readers
Europe PMC, Preprints
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Life Sciences Literature Database
Discovering scientific evidence using Europe PMC SciLite annotation
Biomedical Literature Annotations Literature search SciLite Protein structure viewer Chemical viewer
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Life Sciences Literature Database
Finding the data behind research publications with Europe PMC
Biomedical Literature Data links databases External links
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Series of videos
Query Expansion services - tutorial
•• intermediateData management Data Query data Query expansion -
Video
Overview of the FAIRsharing.org
• beginnerFAIR data Data management FAIR FAIR principles Data sharing -
Video
FAIRplus FAIRification wizard
• beginnerFAIR data FAIR Data management -
Video
Solutions for overcoming cohort data integration challenges using ontology: an introduction
• beginnerOntology and terminology Data integration and warehousing Data management Ontologies Data integration Annotation -
Video
Data harmonization and enrichment using EMBL-EBI ontology tools
• beginnerData management Data submission, annotation, and curation Ontology and terminology CINECA data harmonization Annotation Ontologies -
Video
Annotating data using ontologies
• beginnerData management Data integration and warehousing Ontology and terminology Ontologies Annotation Data integration -
Series of videos
CINECA discovery service catalog
•• intermediateCohort data Standards federated data analysis Beacon queries -
Video
Data Gravity in the Life Sciences: Lessons learned from the HCA and other federated data projects
•• intermediateData architecture, analysis and design Cloud computing Data analysis Standards Translational research
Showing 30 events out of 41 (also found 1773 past events)
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Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
18 - 22 November 2024
United Kingdom
Face-to-face
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FEBS: In Silico Systems Biology: Network Reconstruction, Analysis and Network-based Modelling
No date given
Face-to-face
HDRUK -
EBI - Joint EBI-Wellcome Trust Proteomics Bioinformatics workshop
No date given
Face-to-face
HDRUK -
Using the Ensembl Genome Browser
No date given
Face-to-face
HDRUK -
Workshops and courses
Plant genomes: from data to discovery
18 - 22 November 2024
Online
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Workshops and courses
Structural bioinformatics
4 - 8 November 2024
Online
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Workshops and courses
Managing a bioinformatics core facility
29 - 31 October 2024
United Kingdom
Face-to-face
Bioinformatics Budgeting Project management Team building Principal investigators Core facility services -
Workshops and courses
Metagenomics bioinformatics at MGnify
23 - 27 September 2024
Online
Metagenomic sequencing Metagenomics Database search results MGnify InterPro Proteins (proteins) DNA & RNA (dna-rna) strain resolution functional analysis data submission Metagenome-Assembled Genome (MAG) -
Workshops and courses
Single-cell RNA-seq analysis with Python
23 - 27 September 2024
Online
RNA-Seq analysis Expression data Python script Dimensionality reduction Expression Atlas Spatial mapping of cell types Droplet-based single-cell RNA library preparation single cell expression atlas dimensionality reduction -
Workshops and courses
Proteomics bioinformatics
15 - 19 July 2024
United Kingdom
Face-to-face
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Workshops and courses
Bioinformatics for immunologists
1 - 5 July 2024
United Kingdom
Face-to-face
IntAct Molecular Interaction Database Reactome pathways database Ensembl Expression Atlas Gene expression (gene-expression) immunology transcriptomics analysis flow cytometry multiomics biological pathways immune receptor analysis -
Workshops and courses
Cancer genomics and transcriptomics
24 - 28 June 2024
Online
Next-generation sequencing SNV analysis CNV analysis CRISPR-Cas9 Long-read RNA-seq -
Workshops and courses
Summer school in bioinformatics
17 - 21 June 2024
United Kingdom
Face-to-face
Protein Data Bank in Europe - Knowledge Base BioModels database BioImage Archive Introduction Data management Genome variation Structural bioinformatics Modelling cell signalling Bioimage analysis -
Bioinformatics for principal investigators
11 - 13 June 2024
United Kingdom
Face-to-face
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Workshops and courses
Systems biology: from large datasets to biological insight
10 - 14 June 2024
United Kingdom
Face-to-face
Deep learning Network inference Logic modelling Multi-Omics Factor Analysis Data integration -
Workshops and courses
Introduction to metabolomics analysis
14 - 17 May 2024
United Kingdom
Face-to-face
Metabolomics Mass spectrometry data Metabolic network modelling MetaboLights: Metabolomics repository and reference database Galaxy for metabolomics MS Imaging Metabolite identification -
Bioinformatics resources for protein biology
8 - 10 May 2024
Face-to-face
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Workshops and courses
Microscopy data analysis: machine learning and the BioImage Archive
22 - 26 April 2024
Online
Machine learning Bioimaging Image analysis Bioimage analysis Machine learning models Scientific computing Light microscopy Electron microscopy -
A guide to analysing binding sites in protein structures
No date given
Online
GPU Data protection Job dispatcher Bioimage analysis resource Accessibility Missense variation Biostatistics Rfam DNA & RNA (dna-rna) non-coding RNA Infernal software Sequence annotation Root microbiome Abiotic stress land management Plant genotype Plant webinar series HPC database development cross-linked databases Plant database data infrastructure Plant breeding Data standards data managemnet data sharing Hyb-Seq method Flowering plants Artificial intelligence Crop improvement Pangenomics Pangenomes Virtual humans Drug-target identification plant-microbe interactions Spatial transcriptomics Plant research Europe PubMed Central Open Targets Platform Drug targets Machine learning Mathematical modelling plant science Data integration plant-environment interaction Phenotyping field phenotyping Deep phenotyping EOSC-Life NHGRI-EBI GWAS Catalog clinical data genome-wide association UniProt: The Universal Protein Resource Proteins (proteins) Proteomics API Proteomes Peptide search Ensembl Genomes plants European Variation Archive EVA Variant clusters Variant data annotation Constraint-based metabolic modelling UniProt knowledgebase protein variant impact disease-associated protein variants Bioethics FAIR principles ELSI cohort data translational research BioModels database Mathematical modeling Reproducibity Systems biology models workflows federated analysis polygenic risk scores IntAct Molecular Interaction Database PSICQUIC IMEx Complex portal Agent-based modelling Macrophages Tumorigenesis Ensembl Literature (literature) Training (Training) On-demand teaching introduction Building blocks Data analysis COSMIC Cancer mutation Somatic mutation UniRule UniFIRE ARBA Protein annotation ChEMBL: Bioactive data for drug discovery Chemical compounds drug-like molecules Chemogenomics MetaboLights: Metabolomics repository and reference database Biocurator Programming Data management Green Algorithms Open data Environmental impact Carbon footprint Protein function HPC workflows Orchestrator Gene expression (gene-expression) Chemosensitivity assay Experimental protocols Drug screening MICHA European Genome-phenome Archive EGA restricted access UniProt Introduction UniProtKB Proteome Protein Data Bank in Europe genes Introductory GDPR Data security Expression Atlas Programmatic access UniParc UniRef Pfam InterPro protein sequence search Domain architecture Protein taxonomy Cross domain (cross-domain) Beginner AlphaFold Database AI structure prediction COVID-19 Coronavirus COVID-19 Data Portal Virology Computational simulations Signalling prior knowledge Cancer therapy response PRIDE: The Proteomics Identifications Database protein structure prediction AI system Competency framework Publication Journal club Preprints Aggregated view Structural similarity PPI networks Cell signaling Malaria Biological networks Graph theory Building biological networks Biocuration Information Manager Industry Rare-variant Variant association SKAT Sensitive data Human cohort data FAIR Gene Ontology International Mouse Phenotyping Consortium Portal Biocurators biocuration programming skills training career development Cell-level simulations Personalised medicine PerMedCoE Single cell Phenotype Genome-Wide Association Studies Genome Signaling networks BioImage Archive REST Funding UniChem: Chemical Structure Cross-referencing Chemical biology (chemical-biology) Bioactivity data Drug-like compounds Open access BioStudies Database EBI Search Finding data World Sight Day Eye development Eye disease Open software Complex Portal Metadata Web Services Dbfetch Database fetch programmatic access Open Targets Protein structure prediction Colab notebooks RESTful API RESTful Web Services PDBe Ligand binding sites -
Workshops and courses
Wine yeasts as a model system in community ecology
8 May 2024
Online
Microbiology Microbial ecology UniProt: The Universal Protein Resource Proteins (proteins) Fermentation Microbial ecosystems webinar -
Workshops and courses
Harmony in diversity: exploring the rich microbiomes of South American wildlife
1 May 2024
Online
Microbiology Microbial ecology Metagenomics UniProt: The Universal Protein Resource Proteins (proteins) Fermentation Microbial ecosystems webinar -
Workshops and courses
Introduction to RNA-seq and functional interpretation
24 - 28 February 2025
Online
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Workshops and courses
Cancer genomics and transcriptomics
12 - 16 May 2025
Online
Next-generation sequencing SNV analysis CNV analysis CRISPR-Cas9 Long-read RNA-seq -
Workshops and courses
Microscopy data analysis: machine learning and the BioImage Archive
31 March - 4 April 2025
Online
Machine learning Bioimaging Image analysis Bioimage analysis Machine learning models Scientific computing Light microscopy Electron microscopy -
Workshops and courses
Introduction to multi-omics data integration and visualisation
3 - 7 March 2025
United Kingdom
Face-to-face
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Workshops and courses
Single-cell RNA-seq analysis with Python
17 - 21 February 2025
Online
-
Workshops and courses
Managing a bioinformatics core facility
25 - 27 November 2025
United Kingdom
Face-to-face
Bioinformatics Budgeting Project management Team building Principal investigators Core facility services -
Workshops and courses
Genome bioinformatics: from short- to long-read sequencing
17 - 21 November 2025
United Kingdom
Face-to-face
-
Workshops and courses
Structural bioinformatics
27 - 31 October 2025
Online
-
Workshops and courses
Metagenomics bioinformatics at MGnify
6 - 10 October 2025
United Kingdom
Face-to-face
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CINECA PROJECT
CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon...
17 training materials0 events (3 past events)CINECA PROJECT https://www.cineca-project.eu/ https://tess.elixir-europe.org/content_providers/cineca CINECA’s aim is to deliver a federated infrastructure for data discovery and sharing of human genetic and phenotypic data for research that is interoperable across continents. CINECA [Common Infrastructure for National Cohorts in Europe, Canada and Africa] is funded by the European Union Horizon 2020 programme and the Canadian Institutes of Health Research. /system/content_providers/images/000/000/140/original/CINECA_logo.png?1589875546 -
European Bioinformatics Institute (EBI)
EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry.
379 training materials41 events (1762 past events)European Bioinformatics Institute (EBI) http://www.ebi.ac.uk https://tess.elixir-europe.org/content_providers/european-bioinformatics-institute-ebi EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academia and industry. /system/content_providers/images/000/000/002/original/EBI_logo.png?1469458224
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