Tutorials on COBREXA
COBREXA.jl provides tutorials and notebooks with the purpose of explaining the most important concepts and functions for metabolic modelling and model handling to users, and then practicing them.
The documentation contains basic tutorials (explaining the core package concepts and basic design...
Scientific topics: Simulation experiment, Personalised medicine
Operations: Modelling and simulation
Keywords: cell-level simulations, Biomodelling, HPC
Resource type: Tutorial
Tutorials on COBREXA
https://lcsb-biocore.github.io/COBREXA.jl/stable/
http://tess.elixir-uk.org/materials/tutorials-on-cobrexa
COBREXA.jl provides tutorials and notebooks with the purpose of explaining the most important concepts and functions for metabolic modelling and model handling to users, and then practicing them.
The documentation contains basic tutorials (explaining the core package concepts and basic design ideas), advanced tutorials (describing complicated functionality required for optimised execution of large analyses) and Jupyter notebooks that demonstrate the concepts from tutorials in a more practical setting, with realistic data.
Miroslav Kratochvil
Laurent Heirendt
St Elmo Wilken
Simulation experiment
Personalised medicine
cell-level simulations, Biomodelling, HPC
Analysis of huge metabolic models with COBREXA.jl
COBREXA.jl is a new software package to enable the analysis and simulation of large metabolic models by taking advantages of modern HPC infrastructure. Mainly, it advanced the scalability of constraint-based method, using the Julia programing language and its mathematic ecosystem as a base...
Scientific topics: Simulation experiment
Keywords: cell-level simulations, HPC, Biomodelling
Resource type: Webinar
Analysis of huge metabolic models with COBREXA.jl
https://youtu.be/oIqXNC-0qzk
http://tess.elixir-uk.org/materials/analysis-of-huge-metabolic-models-with-cobrexa-jl
COBREXA.jl is a new software package to enable the analysis and simulation of large metabolic models by taking advantages of modern HPC infrastructure. Mainly, it advanced the scalability of constraint-based method, using the Julia programing language and its mathematic ecosystem as a base building block. We will talk about the problems that motivated the development of COBREXA.jl and show several of its main applications.
Miroslav Kratochvil
Simulation experiment
cell-level simulations, HPC, Biomodelling
Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities
