Target audience: Researchers
Prenomics prepares learners for the Cloud-SPAN Genomics course. It teaches the basics of command-line programming, including: (1) file directory structure, (2) use of command-line utilities to connect to and use cloud computing and storage resources and (3) basic shell commands for file...
Scientific topics: Bioinformatics, Software engineering, Genomics
Operations: Query and retrieval, Data handling
Keywords: Cloud computing, Shell, Command line, Amazon Web Services, genomics, HPC, Data analysis, bioinformatics
Resource type: course materials, online course, Training materials
The European Genome-phenome Archive (EGA) is a resource for archiving of all types of potentially identifiable genetic, phenotypic, and clinical data resulting from biomedical research projects. Its mission is to foster hosted data reuse, enable reproducibility, and...
Scientific topics: Genomics, Bioinformatics
Keywords: e-learning, bioinformatics, Genomics
Resource type: Video
BioData.pt | ELIXIR Portugal, in collaboration with several other organizations has designed a program to train the first generation of Data Stewards for the life sciences, to support the implementation of data management, open science and FAIR data principles in Portuguese R&I organizations....
Scientific topics: FAIR data, Open science, Data management
Keywords: Data management plan, data-science, data-analysis, Data Integration, training, open science, data FAIRness, FAIR data, FAIR, FAIR principles, life sciences, data life cycle
Resource type: Training materials
Presentation from DSW Workshop to explain what is the purpose of smart data management plans as living documents, core ideas behind Data Stewardship Wizard, and how to use it in practice. It also briefly explains the versability of DSW, possibilities of integrations with...
Scientific topics: Data management
Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data
Resource type: Presentation
This training gives an overview and explains what is the purpose of smart data management plans as living documents, core ideas behind Data Stewardship Wizard, and how to use it in practice. Furthermore, it shows the versability of DSW, its top-notch features that make...
Scientific topics: Data management
Keywords: DMP, DMP tools, data stewardship, FAIR, FAIR data
Resource type: Presentation
This short presentation was presented as part of the Friday Coffee presentation series organized by the ELIXIR CZ infrastructure and offered students a basic insight into data management and data management plans, which are important (not only) for the success of scientific projects, but...
Scientific topics: Data management
Keywords: data management plan, data stewardship, FAIR, data management, software tools
Resource type: Video, Webinar
Data Stewardship Wizard brings together data stewards and researchers to efficiently compose data management plans (DMPs) for their research projects. Data stewards capture their knowledge and expertise in so-called knowledge models that are turned into smart...
Scientific topics: Data management, Data governance
Keywords: Data managment plan, data stewardship, data management, software tools
Resource type: Video, Slides, Webinar
The topic is on how you can use NeLS (nels.bioinfo.no) to store and share data, and to run analyses via customisable analysis workflows in usegalaxy.no. You will practice on transferring data between NeLS and usegalaxy.no, and to construct and run a complete sequence analysis workflow in...
Keywords: NeLS, Data storage, data sharing, Data analysis
PDF with slides of the course in Spanish:
- Data management definitions
- DMP Objectives
- DMP Content and structure
- Competencies needed
- Practical session: DMP content analysis and evaluation
Scientific topics: FAIR data, Data management
Keywords: ELIXIR-CONVERGE, DMP, data management plan, research data management, FAIR principles, DMP tools, DMP templates, tools, template, competency, DMP evaluation, evaluation, on-line, e-learning, Spanish
Resource type: PDF, e-learning, slideck/ presentation
Short summary of the previous session
1.Scope of the DM
2.DMP Content and structure
Practical activities
3.Planning the DM of a simple project
4.DMP evaluation
Scientific topics: FAIR data, Data management
Keywords: ELIXIR-CONVERGE, DMP, data management plan, research data management, FAIR principles, DMP tools, DMP templates, tools, template, competency, DMP evaluation, evaluation, on-line, e-learning
Resource type: PDF, e-learning, slideck/ presentation
PDF with slides of the course:
- Data management definitions
- RDM and DM policy
- DMPs: content and competencies
- DMPs for European and National funded projects
Scientific topics: FAIR data, Data management
Keywords: ELIXIR-CONVERGE, DMP, data management plan, research data management, FAIR principles, DMP tools, DMP templates, tools, template, competency, on-line, e-learning
Resource type: PDF, e-learning, slideck/ presentation
Get the essentials about how to manage and share research data from this free introductory online course.
The Research Data Management and Sharing MOOC (Massive Open Online Course) covers:
Understanding research data – the diversity of data and managing it across the research...
Scientific topics: Data management
Keywords: Data Life Cycle, Data managment plan
Resource type: online modules
Slides for the "Data publishing and archival" session of the "Research Data Management and Stewardship Training" held on 14 June 2021 by ELIXIR-Luxembourg.
Keywords: Data publishing, data archiving, Data preserving
Resource type: Presentation
This training video series includes four short videos on research data management. The titles of the videos are the following:
- Introduction to data management for life science researchers
- Introduction to data management planning
- Introduction to sections of a generic data management...
Keywords: DMP, RDM, plan, research data management, data management, data management plan, ELIXIR-CONVERGE
Resource type: Series of videos, Video, youtube video
Slides for the "Practicalities of data handling" session of the "Research Data Management and Stewardship Training" held regularly by ELIXIR-Luxembourg.
Scientific topics: Data security, Data acquisition, Data management
Operations: Data handling
Keywords: data encryption, data protection, setup, checksums, Data transfer, Data storage, data organisation
Resource type: Presentation
Slides for the "Reproducible analysis" session of the "Best practices in research data management and stewardship" held regularly by ELIXIR-Luxembourg.
Scientific topics: Data architecture, analysis and design
Keywords: Workflows, Literate programming, Reproducible Science, Data analysis
Resource type: Presentation
Topics covered:
- The diagnostic process and the types of genetic tests available for rare diseases
- The differences in rare genetic diseases patient pathways
- Technological advances for diagnostic research
- The role of collaborative studies and data sharing in rare diseases diagnosis
-...
Scientific topics: Rare diseases
Keywords: Rare Diseases & Research
Resource type: e-learning
The Minimal Information About Plant Phenotyping Experiment, MIAPPE (www.miappe.org), has been designed by ELIXIR, EMPHASIS and Bioversity international, to guide plant scientist in the management of experimental data. Furthermore, since genetic studies relies on the integration and the linking...
Scientific topics: Plant biology, Phenomics, Data quality management, Data submission, annotation, and curation
Operations: Standardisation and normalisation
Resource type: Video, Slides
The French Institute of Bioinformatics (IFB) has organised in partnership with the Institute of Integrative Biology (I2BC) a training course for bioinformaticians and biostatisticians wishing to implement the "FAIR" principles (Findable, Accessible, Interoperable, Reusable) in their analysis and...
Keywords: FAIR, Reproducible Science, Open science, Data analysis, Data processing
Resource type: Training materials
Scholia is a useful tool for finding scientific literature. Based on the main topic of a publication, you can find literature similar to a publication you are looking into or literature you didn’t know about or consider. Additionally, you can take advantage of all of the annotation work of others...
Keywords: Literature
Resource type: Tutorial
eLearning course about the importance of good research data management (RDM).
The Danish National Forum for Data Management and the Danish Universities have developed the eLearning course “Research Data Management”. The course is divided into 3 independent modules : Introduction; FAIR...
Scientific topics: Rare diseases
Keywords: Rare Diseases & Research
Resource type: e-learning
bio.tools provides essential scientific and technical information about software tools, databases and services for bioinformatics and the life sciences.
Some notable bio.tools documentation links:
- About bio.tools
- [Installing bio.tools on your...
Scientific topics: Bioinformatics, Data submission, annotation, and curation, Computational biology, Ontology and terminology
Operations: Data retrieval
Keywords: Tools, Curation, Software, Sofware curation, Tool curation
Resource type: Documentation, API reference
The WheatIS project aims at building an International Wheat Information System to support the wheat research community. The main objective is to provide a single-access web base system to access to the available data resources and bioinformatics tools. The project is...
Scientific topics: Data management
Keywords: wheat, information system, data discovery
Resource type: Webinar, Slides, Video
Data Stewardship Wizard brings together data stewards and researchers to allow managing data in projects efficiently and in a FAIR manner. Data stewards can easily capture the knowledge including required project data and decisions in knowledge models that are then turned into...
Scientific topics: Data governance, Data management
Keywords: Data management plan, data stewardship, FAIR, data management, software tools
Resource type: Video, Webinar, Slides
Morning session (Sergio and Mark) https://tinyurl.com/git-intro-zoology:
- Background and motivation
- What is version control? What is Git? What is GitHub?
- How can you use Git and GitHub? How can they be useful for you?
- Practical session: working with Git and GitHub
__Afternoon...
Keywords: Git, GitHub, control version, Reproducibility
Resource type: Training materials
Slides for the Data Management Plannning session of the "Research Data Manegement and Stewardship Training" held regularly by ELIXIR-Luxembourg
Keywords: Data management plan
Resource type: Presentation
Slides for the "Introduction to FAIR Principles" session of the "Research Data Manegement and Stewardship Training" held regularly by ELIXIR-Luxembourg.
Keywords: FAIR data
Resource type: Presentation
Slides for the "Data protection, working with sensitive human data in research." session of the "Research Data Management and Stewardship Training" held regularly by ELIXIR-Luxembourg.
Scientific topics: Data governance, Data management
Keywords: GDPR, data protection, sensitive data
Background
The rapid identification of pathogens infecting livestock is essential to appropriately respond to the threat. The number and the variety of pathogen sequenced genomes have been growing more dramatically these recent years, because of the new sequencing technologies. This wealth of...
Keywords: Blast, E learning, Multiple sequence alignment
Resource type: e-learning
Background
The vast diversity of the pathogens affecting livestock demands a very specific diagnostic procedure in identification and characterization of each pathogen. In this context, the enormous amount of sequence and genotype data is being generated on animal pathogens, which is further...
Keywords: Animal pathogens, E learning, Phylogenetics
Resource type: e-learning