Target audience: policy officer or PhD
The topic is on how you can use NeLS (nels.bioinfo.no) to store and share data, and to run analyses via customisable analysis workflows in usegalaxy.no. You will practice on transferring data between NeLS and usegalaxy.no, and to construct and run a complete sequence analysis workflow in...
Keywords: NeLS, Data storage, data sharing, Data analysis
PDF with slides of the course:
- Data management definitions
- RDM and DM policy
- DMPs: content and competencies
- DMPs for European and National funded projects
Scientific topics: Data management, FAIR data
Keywords: ELIXIR-CONVERGE, DMP, data management plan, research data management, FAIR principles, DMP tools, DMP templates, tools, template, competency, on-line, e-learning
Resource type: PDF, e-learning, slideck/ presentation
PDF with slides of the course in Spanish
- Data management definitions
- DMP Objectives
- DMP Content and structure
- Competencies needed
- Practical session: DMP content analysis and evaluation
Scientific topics: FAIR data, Data management
Keywords: ELIXIR-CONVERGE, DMP, DMP tools, DMP templates, DMP evaluation, Data managment plan, research data management, FAIR principles, tools, template, competency, evaluation, online, e-learning, Spanish
Resource type: PDF, e-learning, slideck/ presentation
Slides for the "Practicalities of data handling" session of the "Research Data Management and Stewardship Training" held regularly by ELIXIR-Luxembourg.
Scientific topics: Data management, Data acquisition, Data security
Operations: Data handling
Keywords: data encryption, data protection, setup, checksums, Data transfer, Data storage, data organisation
Resource type: Presentation
PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics. It allows querying and visualising structural and functional annotations, gene families, protein domains, phylogenetic trees, and genome organization. PLAZA 4.0 is the latest iteration of the PLAZA...
Scientific topics: Plant biology, Functional genomics, Comparative genomics, Evolutionary biology, Phylogenomics, Genotype and phenotype
Operations: Annotation, Visualisation, Comparison
Keywords: plants, Plants bioinformatics, genomics, Visualisation, Annotation
Resource type: Training materials
Link to the GitHub repo containing all the publicly available files from the 2015 Metagenomics course held at TGAC in November 2015
Scientific topics: Metagenomics
Keywords: Metagenomics
Training Materials from the 2015 De Novo course run by TGAC
Keywords: De novo, De novo genome assembly
Python is an object-oriented programming language that is ideal for biological data analysis. The course will start with very basic language concepts and instructions and will cover all the main language aspects, including variables, types, modules, functions, exceptions, control of flux, input,...
Keywords: Biopython, Python, Python biologists
This course took place between 12-15 May 2015
Overview:
The course will provide an introduction to de novo assembly, with a hands on introduction followed by in-depth analysis of the key steps in the process. It covers several aspects such as the initial setup of a de novo genome sequencing...
Keywords: De novo
This course took place at TGAC on 8-12 September 2014
What is the workshop about?
A substantial part of the course will be devoted to bioinformatics resources and tools relevant in metagenomics data analysis. Participants will start at the bench and end in front of the computers for a problem...
Scientific topics: Metagenomics
Keywords: Metagenomics