Expanding the SPHN RDF Schema
This training module will provide researchers with an introduction on how to expand the SPHN RDF Schema using an ontology editor.
Scientific topics: Ontology and terminology, Medical informatics, FAIR data, Data management, Computer science
Operations: Editing, Ontology visualisation, Visualisation, Data handling
Keywords: Clinical data, Data semantics, FAIR, Ontology editing, Protegé, RDF, OWL
Resource type: Video, Training materials, E-learning
Expanding the SPHN RDF Schema
https://sphn.ch/training/protege-training/
http://tess.elixir-uk.org/materials/expanding-the-sphn-rdf-schema
This training module will provide researchers with an introduction on how to expand the SPHN RDF Schema using an ontology editor.
Personalized Health Informatics Group
Vasundra Touré
Kristin Gnodke
Sabine Österle
Ontology and terminology
Medical informatics
FAIR data
Data management
Computer science
Clinical data, Data semantics, FAIR, Ontology editing, Protegé, RDF, OWL
Research Scientists
Data Managers
Biomedical Researchers
Bioinformaticians
Data Scientists
Training Primer (RDF and SPARQL)
This training provides a first introduction to RDF and SPARQL.
Scientific topics: Computer science, Data management, FAIR data, Medical informatics, Ontology and terminology
Operations: Query and retrieval, Database search, Data handling, Data retrieval
Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, Triplestore, Ontology
Resource type: Video, Training materials, E-learning
Training Primer (RDF and SPARQL)
https://sphn.ch/training/sphn-rdf-training-primer/
http://tess.elixir-uk.org/materials/training-primer-rdf-and-sparql
This training provides a first introduction to RDF and SPARQL.
Personalized Health Informatics Group
Vasundra Touré
Philip Krauss
Sabine Österle
Computer science
Data management
FAIR data
Medical informatics
Ontology and terminology
Clinical data, SPARQL, Query data, RDF, Knowledge graph, Triplestore, Ontology
Research Scientists
Data Managers
Biomedical Researchers
Bioinformaticians
Data Scientists
Semantic Standards
This training module provides an introduction on the key semantic standards used within SPHN.
Scientific topics: Ontology and terminology, Medical informatics, FAIR data, Data management, Computer science
Operations: Standardisation and normalisation, Data handling
Keywords: Clinical data, Data semantics, FAIR, Standards, Ontology, SNOMED CT, LOINC, ATC, CHOP, ICD
Resource type: Video, Training materials, E-learning
Semantic Standards
https://sphn.ch/training/semantic-standards-training/
http://tess.elixir-uk.org/materials/semantic-standards
This training module provides an introduction on the key semantic standards used within SPHN.
Personalized Health Informatics Group
Kristin Gnodke
Sabine Österle
Ontology and terminology
Medical informatics
FAIR data
Data management
Computer science
Clinical data, Data semantics, FAIR, Standards, Ontology, SNOMED CT, LOINC, ATC, CHOP, ICD
Research Scientists
Data Managers
Biomedical Researchers
Bioinformaticians
Data Scientists
RDF Schema and Data Visualization
This training module will provide researchers with an introduction on how to explore and visualize the SPHN ontology and mock data.
Scientific topics: Data visualisation, Medical informatics, FAIR data, Data management, Computer science
Operations: Ontology visualisation, Visualisation, Data retrieval, Data handling, Query and retrieval
Keywords: Clinical data, SPARQL, Data visualization, RDF, Knowledge graph, GraphDB, Mock data
Resource type: Video, Training materials, Mock data, E-learning
RDF Schema and Data Visualization
https://sphn.ch/training/datavisualization/
http://tess.elixir-uk.org/materials/rdf-schema-and-data-visualization
This training module will provide researchers with an introduction on how to explore and visualize the SPHN ontology and mock data.
Personalized Health Informatics Group
Petar Horki
Vasundra Touré
Sabine Österle
Data visualisation
Medical informatics
FAIR data
Data management
Computer science
Clinical data, SPARQL, Data visualization, RDF, Knowledge graph, GraphDB, Mock data
Research Scientists
Data Managers
Biomedical Researchers
Bioinformaticians
Data Scientists
Validate Graph Data with SHACL
This training module will provide researchers with an introduction on SHACL for RDF graphs validation.
Scientific topics: Computer science, Data management, FAIR data, Medical informatics
Operations: Data handling, Validation
Keywords: Clinical data, SHACL, Data validation, RDF, Knowledge graph, GraphDB, RDF, RDF graph validation
Resource type: Video, Training materials, E-learning
Validate Graph Data with SHACL
https://sphn.ch/validate-graph-data-with-shacl/
http://tess.elixir-uk.org/materials/validate-graph-data-with-shacl
This training module will provide researchers with an introduction on SHACL for RDF graphs validation.
Personalized Health Informatics Group
Philip Krauss
Martin Zablocki
Sabine Österle
Vasundra Touré
Computer science
Data management
FAIR data
Medical informatics
Clinical data, SHACL, Data validation, RDF, Knowledge graph, GraphDB, RDF, RDF graph validation
Research Scientists
Data Managers
Biomedical Researchers
Bioinformaticians
Data Scientists
How to use Python and R with RDF Data
This training module will provide researchers with an introduction on how use R and Python in combination with SPARQL to query RDF data.
Scientific topics: Medical informatics, FAIR data, Data management, Computer science
Operations: Data retrieval, Data handling, Query and retrieval
Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, Python, R, GraphDB
Resource type: Video, Training materials, Mock data, E-learning
How to use Python and R with RDF Data
https://sphn.ch/training/pythonandr/
http://tess.elixir-uk.org/materials/how-to-use-python-and-r-with-rdf-data
This training module will provide researchers with an introduction on how use R and Python in combination with SPARQL to query RDF data.
Personalized Health Informatics Group
Petar Horki
Sabine Österle
Vasundra Touré
Medical informatics
FAIR data
Data management
Computer science
Clinical data, SPARQL, Query data, RDF, Knowledge graph, Python, R, GraphDB
Research Scientists
Data Managers
Biomedical Researchers
Bioinformaticians
Data Scientists
Querying Data with SPARQL
This training module will provide researcher with an introduction to SPARQL queries for health-related data.
Scientific topics: Computer science, Data management, FAIR data, Medical informatics
Operations: Query and retrieval, Database search, Data handling, Data retrieval
Keywords: Clinical data, SPARQL, Query data, RDF, Knowledge graph, SNOMED CT, LOINC
Resource type: Video, Training materials with mock data, E-learning
Querying Data with SPARQL
https://sphn.ch/training/querying-data-with-sparql/#
http://tess.elixir-uk.org/materials/querying-data-with-sparql
This training module will provide researcher with an introduction to SPARQL queries for health-related data.
Personalized Health Informatics Group
Vasundra Touré
Philip Krauss
Sabine Österle
Computer science
Data management
FAIR data
Medical informatics
Clinical data, SPARQL, Query data, RDF, Knowledge graph, SNOMED CT, LOINC
Research Scientists
Data Managers
Biomedical Researchers
Bioinformaticians
Data Scientists
Slides from Data Management Planning Workshop
Slides from Data Management Planning online workshop for Life Science Projects for researchers at UiO 2020-12-11
Scientific topics: Data management
Operations: Data handling, Data retrieval, Deposition
Keywords: Data management plan, data management
Resource type: Slides
Slides from Data Management Planning Workshop
https://doi.org/10.5281/zenodo.4317590
http://tess.elixir-uk.org/materials/slides-from-data-management-planning-workshop-96479971-67e0-47d6-a5de-b2b8f4dbea62
Slides from Data Management Planning online workshop for Life Science Projects for researchers at UiO 2020-12-11
Korbinian Bösl
Elin Stangeland
Lars Soligard
Federico Bianchini
Data management
Data management plan, data management
PhD students
Professors
Professors
All postgraduates
Slides from Data Management Planning Workshop
Slides from Data Management Planning online workshop for Life Science Projects for researchers at NTNU 2020-12-01
Scientific topics: Data management
Operations: Data handling, Data retrieval, Deposition
Keywords: Data management plan, data management
Resource type: Slides
Slides from Data Management Planning Workshop
https://zenodo.org/record/4300456
http://tess.elixir-uk.org/materials/slides-from-data-management-planning-workshop-08010d67-d503-436b-95b9-6fe29f47ebba
Slides from Data Management Planning online workshop for Life Science Projects for researchers at NTNU 2020-12-01
Korbinian Bösl
Ane Møller Gabrielsen
Heine Skipenes
Anne Heidi Skogholt
Kjersti Rise
Hilde Eikemo
Data management
Data management plan, data management
PhD students
Professors
Post Docs
All postgraduates
Slides from Data Management Planning Workshop
Slides from Data Management Planning workshop for Life Science Projects in Ås 11 March 2020
Scientific topics: Data management
Operations: Deposition, Data retrieval, Data handling
Keywords: Data management plan, data management
Resource type: Slides
Slides from Data Management Planning Workshop
https://zenodo.org/record/3703307
http://tess.elixir-uk.org/materials/slides-from-data-management-planning-workshop-1bb3798d-4e70-423c-87b6-82ac7e5e5c54
Slides from Data Management Planning workshop for Life Science Projects in Ås 11 March 2020
Korbinian Bösl
Solveig Fossum-Raunehaug
Data management
Data management plan, data management
PhD students
Post Docs
Professors
Slides from Data Management Planning Workshop
Slides from Data Management Planning workshop for Life Science Projects in Bergen 04 March 2020
Scientific topics: Data management
Operations: Data handling, Data retrieval, Deposition
Keywords: Data management plan, data management
Resource type: Slides
Slides from Data Management Planning Workshop
https://zenodo.org/record/3713239
http://tess.elixir-uk.org/materials/slides-from-data-management-planning-workshop
Slides from Data Management Planning workshop for Life Science Projects in Bergen 04 March 2020
Korbinian Bösl
Beate Krøvel Humberset
Kjersti Enerstvedt
Tore Linde
Data management
Data management plan, data management
PhD students
Post Docs
Professors
